ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24g04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189556.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3139 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 184 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 243 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 213 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 272 Query: 244 agcgtggaatcgacgtggtcct 265 |||| || || || |||||||| Sbjct: 273 agcgcggcattgatgtggtcct 294
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 184 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 243 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 4253482 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 4253541 Query: 244 agcgtggaatcgacgtggtcct 265 |||| || || || |||||||| Sbjct: 4253542 agcgcggcattgatgtggtcct 4253563
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 184 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 243 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 91449 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 91508 Query: 244 agcgtggaatcgacgtggtcct 265 |||| || || || |||||||| Sbjct: 91509 agcgcggcattgatgtggtcct 91530
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 184 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 243 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 33252 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 33311 Query: 244 agcgtggaatcgacgtggtcct 265 |||| || || || |||||||| Sbjct: 33312 agcgcggcattgatgtggtcct 33333
>dbj|AK100676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113C17, full insert sequence Length = 3139 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 184 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 243 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 213 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 272 Query: 244 agcgtggaatcgacgtggtcct 265 |||| || || || |||||||| Sbjct: 273 agcgcggcattgatgtggtcct 294
>dbj|AK059244.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-G02, full insert sequence Length = 1164 Score = 67.9 bits (34), Expect = 2e-08 Identities = 70/82 (85%) Strand = Plus / Plus Query: 184 agatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggc 243 ||||||| |||||||| |||||||| || ||||||||||||||||||| || || |||| Sbjct: 159 agatgagcgtggtgggctttgatctagggaatgagagctgcattgtggccgtcgcgcggc 218 Query: 244 agcgtggaatcgacgtggtcct 265 |||| || || || |||||||| Sbjct: 219 agcgcggcattgatgtggtcct 240
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Plus Query: 185 gatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggca 244 |||||| ||||||||||| || | |||||||||||| |||| || | ||||| ||||| Sbjct: 4820085 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 4820144 Query: 245 gcgtggaatcgacgtggt 262 ||| || ||||||||||| Sbjct: 4820145 gcggggcatcgacgtggt 4820162
>dbj|AK122040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113E02, full insert sequence Length = 3137 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Plus Query: 185 gatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggca 244 |||||| ||||||||||| || | |||||||||||| |||| || | ||||| ||||| Sbjct: 183 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 242 Query: 245 gcgtggaatcgacgtggt 262 ||| || ||||||||||| Sbjct: 243 gcggggcatcgacgtggt 260
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Plus Query: 185 gatgagtgtggtggggtttgatctgggcaatgagagctgcattgtgggggtggcccggca 244 |||||| ||||||||||| || | |||||||||||| |||| || | ||||| ||||| Sbjct: 92493 gatgagcgtggtggggttcgacgtcggcaatgagagcggcatcgtcgccgtggcgcggca 92552 Query: 245 gcgtggaatcgacgtggt 262 ||| || ||||||||||| Sbjct: 92553 gcggggcatcgacgtggt 92570
>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16 Length = 349635 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 ctctggcaccggcaacggcctcctca 115 ||||||| |||||||||||||||||| Sbjct: 256544 ctctggctccggcaacggcctcctca 256569
>ref|XM_545469.2| PREDICTED: Canis familiaris similar to Tripartite motif protein 26 (Zinc finger protein 173) (Acid finger protein) (AFP) (RING finger protein 95) (LOC488347), mRNA Length = 1530 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Plus Query: 215 tgagagctgcattgtgggggtggcc 239 |||||||||||| |||||||||||| Sbjct: 1212 tgagagctgcatggtgggggtggcc 1236
>emb|AL049859.7|HSJ826A18 Human DNA sequence from clone RP5-826A18 on chromosome Xq23, complete sequence Length = 77913 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 tggggtttgatctgggcaatg 216 ||||||||||||||||||||| Sbjct: 52761 tggggtttgatctgggcaatg 52781
>gb|AC096625.25| Mus musculus strain C57BL/6J clone rp23-388i7 map 1, complete sequence Length = 191415 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 gcctcatcagctgcggcggctacc 67 ||||||||||||||||| |||||| Sbjct: 49794 gcctcatcagctgcggctgctacc 49817
>gb|AC163613.5| Mus musculus BAC clone RP24-150N2 from chromosome 1, complete sequence Length = 135256 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 gcctcatcagctgcggcggctacc 67 ||||||||||||||||| |||||| Sbjct: 676 gcctcatcagctgcggctgctacc 653
>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete Sequence, complete sequence Length = 195048 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 agaagcaaagctccagaagc 87 |||||||||||||||||||| Sbjct: 187805 agaagcaaagctccagaagc 187824
>emb|BX572083.6| Zebrafish DNA sequence from clone DKEY-232J4 in linkage group 13, complete sequence Length = 99030 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttgatctgggcaatgagagc 221 |||||||||||||||||||| Sbjct: 68027 ttgatctgggcaatgagagc 68008
>gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147520 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gacaccagcctcatcagctg 56 |||||||||||||||||||| Sbjct: 6708 gacaccagcctcatcagctg 6689
>dbj|AK125374.1| Homo sapiens cDNA FLJ43384 fis, clone OCBBF2006148, moderately similar to P53-BINDING PROTEIN 2 Length = 3137 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gaagcttctctggcaccggc 102 |||||||||||||||||||| Sbjct: 88 gaagcttctctggcaccggc 69
>gb|AC025475.5| Homo sapiens chromosome 5 clone RP11-351N6, complete sequence Length = 186462 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gctgctgccaagacaccagc 45 |||||||||||||||||||| Sbjct: 9060 gctgctgccaagacaccagc 9041
>gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, complete sequence Length = 156789 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 gctgctgccaagacaccagc 45 |||||||||||||||||||| Sbjct: 148737 gctgctgccaagacaccagc 148718
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 acggcctcctcaccgcgggtgtag 127 |||||||||||||||| ||||||| Sbjct: 3985224 acggcctcctcaccgccggtgtag 3985247
>emb|AL049840.8|CNS0000K Human chromosome 14 DNA sequence BAC R-73M18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165617 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 gaagcttctctggcaccggc 102 |||||||||||||||||||| Sbjct: 109196 gaagcttctctggcaccggc 109177
>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence Length = 194611 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 agaagcaaagctccagaagc 87 |||||||||||||||||||| Sbjct: 49613 agaagcaaagctccagaagc 49632
>dbj|AB070950.1| Streptomyces avermitilis peptide-1 biosynthetic gene cluster Length = 21391 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 acggcctcctcaccgcgggtgtag 127 |||||||||||||||| ||||||| Sbjct: 10968 acggcctcctcaccgccggtgtag 10945 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,146,611 Number of Sequences: 3902068 Number of extensions: 2146611 Number of successful extensions: 37474 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37410 Number of HSP's gapped (non-prelim): 64 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
