ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24f09 |
|---|---|
| Clone Library Name | barley_pub |
>DHON_METGL (P37144) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 412 Score = 30.4 bits (67), Expect = 1.3 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = -2 Query: 167 LICTSPWRWRGFGGCGEACPVLLFSGAGAGEE 72 LIC WR G G C L+ GAGAG E Sbjct: 254 LICQCEWRNECCAGQGRCCWPTLYYGAGAGAE 285
>FGD1_MOUSE (P52734) FYVE, RhoGEF and PH domain-containing protein 1| (Faciogenital dysplasia 1 protein homolog) (Zinc finger FYVE domain-containing protein 3) (Rho/Rac guanine nucleotide exchange factor FGD1) (Rho/Rac GEF) Length = 960 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 70 LSSPAPAPEKRSTGQASPHPPKPRHLQ 150 + P P+P KR+ G PPKP +LQ Sbjct: 143 IPGPRPSPLKRAPGPKPQVPPKPSYLQ 169
>HIS8_SYNY3 (P73807) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 349 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +1 Query: 70 LSSPAPAPEKRSTGQASPHPPKPRHLQGE 156 L+ P PE + ASP+PPK +HL E Sbjct: 134 LTGPVICPEAKLIFLASPNPPKGKHLNRE 162
>SCNND_PANTR (O46547) Amiloride-sensitive sodium channel delta-subunit| (Epithelial Na+ channel delta subunit) (Delta ENaC) (Nonvoltage-gated sodium channel 1 delta subunit) (SCNED) (Delta NaCH) Length = 638 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 67 HLSSPAPAPEKRSTGQASPHPPKPRHLQGEVQINSS 174 HL + A P + A P PPK H +G V++ +S Sbjct: 20 HLQAAAQTPPRPGPPSAPPPPPKEGHQEGLVELPAS 55
>SCNND_HUMAN (P51172) Amiloride-sensitive sodium channel delta-subunit| (Epithelial Na+ channel delta subunit) (Delta ENaC) (Nonvoltage-gated sodium channel 1 delta subunit) (SCNED) (Delta NaCH) Length = 638 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 67 HLSSPAPAPEKRSTGQASPHPPKPRHLQGEVQINSS 174 HL + A P + A P PPK H +G V++ +S Sbjct: 20 HLQAAAQTPPRPGPPSAPPPPPKEGHQEGLVELPAS 55
>PUTA_SALTY (P10503) Bifunctional protein putA [Includes: Proline dehydrogenase| (EC 1.5.99.8) (Proline oxidase); Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C dehydrogenase)] Length = 1320 Score = 28.9 bits (63), Expect = 3.8 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 5/42 (11%) Frame = +1 Query: 70 LSSPAPAPEK--RSTGQAS-PHP--PKPRHLQGEVQINSSVL 180 ++ P A EK + GQA PHP P PR L GE +INS+ L Sbjct: 581 VADPVEAVEKLAQQEGQAGIPHPKIPLPRDLYGEGRINSAGL 622
>DHSB_SALTY (Q8ZQU2) Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)| Length = 238 Score = 28.1 bits (61), Expect = 6.4 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +2 Query: 152 AKCRSTAPCFWWRPDTVARTEGL 220 A C ++ P FWW PD GL Sbjct: 153 ACCSTSCPSFWWNPDKFIGPAGL 175
>DHSB_ECOLI (P07014) Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)| Length = 238 Score = 28.1 bits (61), Expect = 6.4 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +2 Query: 152 AKCRSTAPCFWWRPDTVARTEGL 220 A C ++ P FWW PD GL Sbjct: 153 ACCSTSCPSFWWNPDKFIGPAGL 175
>DHSB_COXBU (P51053) Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)| Length = 235 Score = 28.1 bits (61), Expect = 6.4 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +2 Query: 152 AKCRSTAPCFWWRPDTVARTEGL 220 A C S+ P +WW PD GL Sbjct: 147 ACCSSSCPSYWWNPDKFIGPAGL 169
>IL6RB_MOUSE (Q00560) Interleukin-6 receptor beta chain precursor (IL-6R-beta)| (Interleukin 6 signal transducer) (Membrane glycoprotein 130) (gp130) (CD130 antigen) Length = 917 Score = 27.7 bits (60), Expect = 8.4 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +1 Query: 61 RKHLSSPAPAPEKRSTGQASPHPPKPRH 144 +KH+ P P K Q SPH P PRH Sbjct: 646 KKHIWPNVPDPSKSHIAQWSPHTP-PRH 672
>HXABA_BRARE (Q9DDU0) Homeobox protein Hox-A11a| Length = 284 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +1 Query: 73 SSPAPAPEKRSTGQASPHPPKPRHLQGEVQINSS 174 S+PAPAPE++ G+ P P G + +S Sbjct: 171 STPAPAPEQQPEGKERPETSSPESSSGNNEEKTS 204
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = +1 Query: 61 RKHLSSPAPAPEKRSTGQASPHPPKP 138 R+ SP PA +RS A P PP P Sbjct: 558 RRRSPSPPPARRRRSPSPAPPPPPPP 583
>IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (IL-6R-beta)| (Interleukin 6 signal transducer) (Membrane glycoprotein 130) (gp130) (CD130 antigen) Length = 918 Score = 27.7 bits (60), Expect = 8.4 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +1 Query: 61 RKHLSSPAPAPEKRSTGQASPHPPKPRH 144 +KH+ P P K Q SPH P PRH Sbjct: 647 KKHIWPNVPDPSKSHIAQWSPHTP-PRH 673
>IL6RB_HUMAN (P40189) Interleukin-6 receptor beta chain precursor (IL-6R-beta)| (Interleukin 6 signal transducer) (Membrane glycoprotein 130) (gp130) (Oncostatin M receptor) (CD130 antigen) (CDw130) Length = 918 Score = 27.7 bits (60), Expect = 8.4 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +1 Query: 61 RKHLSSPAPAPEKRSTGQASPHPPKPRH 144 +KH+ P P K Q SPH P PRH Sbjct: 648 KKHIWPNVPDPSKSHIAQWSPHTP-PRH 674 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,322,183 Number of Sequences: 219361 Number of extensions: 372982 Number of successful extensions: 2478 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2170 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2460 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
