ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24f08 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 103 bits (258), Expect = 9e-23 Identities = 48/70 (68%), Positives = 58/70 (82%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GG++ LTG + A LKG+VVLMRKN LD NDFGAT++DG+ E LG+GVTCQLISST V Sbjct: 3 LGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAV 62 Query: 254 DHNNGGRGKV 283 D +NGGRGKV Sbjct: 63 DQDNGGRGKV 72
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 100 bits (250), Expect = 7e-22 Identities = 48/70 (68%), Positives = 57/70 (81%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GGI+ +TG + + LKG+VVLMRKN LD NDFGATV+DG+ E LG+GVTCQLISST V Sbjct: 2 LGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTAV 61 Query: 254 DHNNGGRGKV 283 D NNG RGKV Sbjct: 62 DPNNGNRGKV 71
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 100 bits (250), Expect = 7e-22 Identities = 49/70 (70%), Positives = 59/70 (84%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GGI+ LTG + A LKGS+VLMRKNALD NDFGATV+DG++E LGRGVTCQL+SS+ V Sbjct: 2 LGGIIGGLTGN-KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSLV 60 Query: 254 DHNNGGRGKV 283 D NNG RG+V Sbjct: 61 DPNNGNRGRV 70
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 63.9 bits (154), Expect = 1e-10 Identities = 33/70 (47%), Positives = 44/70 (62%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNV 253 +GG+ LTG G +KG VLM + LD DF A+++D V E+ G +TCQL+S+T Sbjct: 2 LGGLKDKLTGK-NGNKIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATVA 60 Query: 254 DHNNGGRGKV 283 D NN GRG V Sbjct: 61 DQNNEGRGIV 70
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 62.4 bits (150), Expect = 3e-10 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 3/66 (4%) Frame = +2 Query: 95 LTGG---LRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNN 265 LTGG +KG+VVLM+KN LDFNDF A+ +D + E LG +T +L+SS D N Sbjct: 9 LTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVSSDVTDSEN 68 Query: 266 GGRGKV 283 G +GK+ Sbjct: 69 GSKGKL 74
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 61.2 bits (147), Expect = 6e-10 Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 5/71 (7%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 247 ++ L GGL G H +KG+VV+M+KNALDF D ++ D + E LG+ V+ QLISS Sbjct: 1 MLGQLVGGLIGGHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSV 60 Query: 248 NVDHNNGGRGK 280 D NG +GK Sbjct: 61 QSDPANGLQGK 71
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 58.5 bits (140), Expect = 4e-09 Identities = 32/66 (48%), Positives = 45/66 (68%), Gaps = 1/66 (1%) Frame = +2 Query: 74 VGGIVSDLTGGLRGAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLIS-STN 250 +GGIV + G +KG V+LM+KN LDF + GA+V+DG+++LLG+ V+ QLIS S N Sbjct: 3 LGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISGSVN 62 Query: 251 VDHNNG 268 D G Sbjct: 63 YDGLEG 68
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 55.8 bits (133), Expect = 3e-08 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 5/71 (7%) Frame = +2 Query: 83 IVSDLTGGLRGAH-----LKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 247 ++ +T GL G H +KG+VV+M KN LDF D ++ + ++LG+ V+ QLISS Sbjct: 1 MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSV 60 Query: 248 NVDHNNGGRGK 280 D NG +GK Sbjct: 61 QGDPTNGLQGK 71
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 53.5 bits (127), Expect = 1e-07 Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 6/76 (7%) Frame = +2 Query: 74 VGGIVSDLTGGLRGA----HLKGSVVLMRKNALDFNDFGATVMDGVTELLG--RGVTCQL 235 V G LTG + A ++G+ VL++K+ L DF A+++DGV +LG GV +L Sbjct: 3 VQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAFRL 62 Query: 236 ISSTNVDHNNGGRGKV 283 +S+T D +NGGRGK+ Sbjct: 63 VSATARDPSNGGRGKL 78
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 52.4 bits (124), Expect = 3e-07 Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 19/83 (22%) Frame = +2 Query: 92 DLTGGLRGAH-LKGSVVLMRKNALDFN--------------DFGATV----MDGVTELLG 214 ++TG L H ++G+VVLMRKN LDFN D G + +DG+T LG Sbjct: 4 NVTGLLNKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLG 63 Query: 215 RGVTCQLISSTNVDHNNGGRGKV 283 R V+ QLIS+T D N G+GKV Sbjct: 64 RSVSLQLISATKSDAN--GKGKV 84
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 49.3 bits (116), Expect = 3e-06 Identities = 34/79 (43%), Positives = 44/79 (55%), Gaps = 14/79 (17%) Frame = +2 Query: 89 SDLTGGL-RGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELLGRGVT 226 S +TG L RG +KG+VVLMRKN LD N D + +D +T LGR V+ Sbjct: 3 SGVTGILNRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVS 62 Query: 227 CQLISSTNVDHNNGGRGKV 283 QLIS+T D G+GK+ Sbjct: 63 LQLISATKPDAT--GKGKL 79
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 49.3 bits (116), Expect = 3e-06 Identities = 37/92 (40%), Positives = 45/92 (48%), Gaps = 19/92 (20%) Frame = +2 Query: 65 MFGVGGIVSDLTGGLRGAH-LKGSVVLMRKNALDFNDFG------------------ATV 187 MF V G+ L G G H +KG+VVLMRKN LDFN + Sbjct: 1 MFSVPGVSGILNRG--GGHKIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGST 58 Query: 188 MDGVTELLGRGVTCQLISSTNVDHNNGGRGKV 283 +D +T LGR V QLIS+T N G+GKV Sbjct: 59 LDNLTAFLGRSVALQLISATKPLAN--GKGKV 88
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 48.9 bits (115), Expect = 3e-06 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 15/78 (19%) Frame = +2 Query: 95 LTGGL--RGAHLKGSVVLMRKNALDFN-------------DFGATVMDGVTELLGRGVTC 229 + GGL RG +KG+VVLMRKN L N D + +D +T LGR V+ Sbjct: 1 MLGGLLHRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFLGRPVSL 60 Query: 230 QLISSTNVDHNNGGRGKV 283 QLIS+T D N G+GK+ Sbjct: 61 QLISATKADAN--GKGKL 76
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 47.4 bits (111), Expect = 1e-05 Identities = 28/57 (49%), Positives = 37/57 (64%) Frame = +2 Query: 113 GAHLKGSVVLMRKNALDFNDFGATVMDGVTELLGRGVTCQLISSTNVDHNNGGRGKV 283 G +KG+VVLM KN L+ N G+ V D + LGR V+ QLIS+T D + G+GKV Sbjct: 5 GHKIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKV 58
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 45.8 bits (107), Expect = 3e-05 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 23/80 (28%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 223 RG +KG+VVLM KN DFN+F +T ++DG T + R + Sbjct: 7 RGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRNI 66 Query: 224 TCQLISSTNVDH-NNGGRGK 280 QLIS+T D NG GK Sbjct: 67 AIQLISATKTDGLGNGKVGK 86
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 43.1 bits (100), Expect = 2e-04 Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 22/80 (27%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFNDFGAT----------------------VMDGVTELLGRGV 223 +G +KG+VVLM KN LDFN + V+D T LGR + Sbjct: 7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNI 66 Query: 224 TCQLISSTNVDHNNGGRGKV 283 + QLIS+T D G GKV Sbjct: 67 SMQLISATQTD--GSGNGKV 84
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 42.7 bits (99), Expect = 2e-04 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 20/78 (25%) Frame = +2 Query: 110 RGAHLKGSVVLMRKNALDFN--------------------DFGATVMDGVTELLGRGVTC 229 RG LKG+V+LM+KN LD N +++D T LGR V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 230 QLISSTNVDHNNGGRGKV 283 +LIS+T D + G+GKV Sbjct: 68 RLISATVADAS--GKGKV 83
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 37.4 bits (85), Expect = 0.010 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 13/73 (17%) Frame = +2 Query: 104 GLRGAHLKGSVVLMRKNALDFND-------------FGATVMDGVTELLGRGVTCQLISS 244 G +G +KG++V+M+KN LD N F + +D +T ++ QLIS+ Sbjct: 5 GQKGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLGFIGSAVDALT-FAATKISIQLISA 63 Query: 245 TNVDHNNGGRGKV 283 T D GG+GK+ Sbjct: 64 TKAD---GGKGKI 73
>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4| (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1) Length = 779 Score = 35.4 bits (80), Expect = 0.038 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Frame = -3 Query: 273 RPPLLWSTLVELMSWQVTPRPRSSVT-----PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 109 R P L++ L S PRPRS+ PS AP + + R+ PL W P+ Sbjct: 228 RSPDLFTPLSRPPSPLSLPRPRSAPARRPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQ 287 Query: 108 RPPVRSLTMPPTP 70 R ++L+ PPTP Sbjct: 288 R---QTLSRPPTP 297
>UL14_EHV1V (P84404) Hypothetical gene 48 protein| Length = 317 Score = 30.8 bits (68), Expect = 0.93 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 184 GGAEVVEVERVLAHEDDGAL-EVGAPEAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L EAPR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>UL14_EHV1B (P28949) Hypothetical gene 48 protein| Length = 317 Score = 30.8 bits (68), Expect = 0.93 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 184 GGAEVVEVERVLAHEDDGAL-EVGAPEAPRQVAHDAADAKHLRSISGECGTLAKLARCGA 8 GG EV + + L HED+ L EAPR AAD RS + ARCGA Sbjct: 132 GGGEVGDPQEWLGHEDEALLMRWMLEEAPRVSTRIAADPHSPRSTCPAPRKAPEDARCGA 191
>USH1C_MOUSE (Q9ES64) Harmonin (Usher syndrome type-1C protein homolog) (PDZ| domain-containing protein) Length = 910 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -3 Query: 225 VTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNI 64 V P P S +PS AP L SS + ++ W R PP + +PP P+I Sbjct: 563 VMPHPPSVNSPSKVPAPPVLPSSGHVSSSSSP---WVQRTPP--PIPIPPPPSI 611
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -3 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 109 T P PP M+ +TP P S+ T P+ T +P + ++ T P P Sbjct: 1498 TTPSPP---------MTTPITP-PASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPI 1547 Query: 108 RPPVRSLTMPPT 73 PP + T+PPT Sbjct: 1548 TPPTSTTTLPPT 1559 Score = 29.6 bits (65), Expect = 2.1 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Frame = -3 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT----PSMTVAPKSLKSSAFLRMRTTEPLRWA 115 T P PP + +T + TP P ++ T P+ T +P + TT P Sbjct: 1584 TTPSPPTITTTTPPPTT---TPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTT 1640 Query: 114 PRRPPVRSLTMPPT 73 P PP + T PPT Sbjct: 1641 PSPPPTTTTTPPPT 1654 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Frame = -3 Query: 282 TFPRPPLLWSTLVELMSWQVTPRPRSSVT--PSMTVAPKSLKSSAFLRMRTTEPLRWAPR 109 T P PP+ +T + TP P ++ P+ T +P + ++ T P P Sbjct: 1452 TTPSPPISTTTTPPPTT---TPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPI 1508 Query: 108 RPPVRSLTMPPT 73 PP + T+PPT Sbjct: 1509 TPPASTTTLPPT 1520
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -3 Query: 222 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 133 TP P S +PS+ +L+ S F+RM++T Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKST 270
>TRPM2_HUMAN (O94759) Transient receptor potential cation channel subfamily M| member 2 (EC 3.6.1.13) (Long transient receptor potential channel 2) (LTrpC2) (LTrpC-2) (Transient receptor potential channel 7) (TrpC7) (Estrogen-responsive element-associated Length = 1503 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +2 Query: 140 LMRKNALDFNDFGATVMDGVTELLGRGVTCQLISST 247 LM+K AL F+DF + G L G+TC+LI +T Sbjct: 856 LMKKAALYFSDFWNKLDVGAILLFVAGLTCRLIPAT 891
>IWS1_XENTR (Q505H7) IWS1-like protein| Length = 909 Score = 29.6 bits (65), Expect = 2.1 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%) Frame = -2 Query: 187 DGGAEVVEVERVLAHEDDG-----ALEVGAPEAPRQVAH-DAADAKHLRSISG 47 DGGA V+ ER A +D+G E G+PE + H D D KH RS SG Sbjct: 15 DGGATPVQDERDSASDDEGNEREQRSEPGSPERQSEDEHSDIEDNKH-RSDSG 66
>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)| Length = 279 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/51 (37%), Positives = 20/51 (39%) Frame = -3 Query: 222 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTP 70 TP P S TPS T P S T P P P S T PP+P Sbjct: 136 TPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSP---TPTPSPTPSPTPPPSP 183
>PYRH_DEIRA (Q9RU81) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 245 Score = 28.9 bits (63), Expect = 3.5 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%) Frame = +2 Query: 44 LPRDRAKMFGVGG----IVSDLTGGLRGAHLKGSVVLMRKNALD 163 L + R +FG G +D T LR + VVLM KNA+D Sbjct: 127 LEKGRVVIFGGGNGAPFFTTDTTSTLRALEIGADVVLMAKNAVD 170
>IWS1A_XENLA (Q6DE96) IWS1-like protein A| Length = 836 Score = 28.9 bits (63), Expect = 3.5 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Frame = -2 Query: 187 DGGAEVVEVERVLAHEDDG---ALEVGAPEAPRQVAH-DAADAKH 65 DGGA V+ ER A +D+G E G+PE + H D D KH Sbjct: 13 DGGATPVQDERDSASDDEGNEQRSEPGSPEHQSEDEHSDVEDHKH 57
>GLTB_MAIZE (P23225) Ferredoxin-dependent glutamate synthase, chloroplast| precursor (EC 1.4.7.1) (Fd-GOGAT) Length = 1616 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -2 Query: 115 APEAPRQVAHDAADAKHLRSISGECG 38 AP AP++ AAD H+ S G CG Sbjct: 74 APPAPQKPTQQAADLNHILSERGACG 99
>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 925 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 222 TPRPRSSVTPSMTVAPKSLKSSAFLRMRTT 133 TP P + +PS+ +L+ S F+RM++T Sbjct: 246 TPEPVETTSPSLLTTDNTLERSFFIRMKST 275
>HUNB_DROIK (O46242) Protein hunchback (Fragments)| Length = 193 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/68 (25%), Positives = 34/68 (50%) Frame = -3 Query: 273 RPPLLWSTLVELMSWQVTPRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVR 94 RPP L + + +M + P P ++ T + T A S ++A + +++ + L+ P Sbjct: 101 RPPGLPNPMQTIMPANMRPSPTATTTATTTAAAASTTTAATVALQSNDKLQ---ALTPPM 157 Query: 93 SLTMPPTP 70 +T P +P Sbjct: 158 DVTPPKSP 165
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -3 Query: 219 PRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRS 91 P P SS TP++ V P + ++ L +T+P P+ PV S Sbjct: 1026 PPPASSATPALHVQPLAPAAAPSLLQASTQPEVLLPKPAPVYS 1068
>CI079_HUMAN (Q6ZUB1) Protein C9orf79| Length = 1445 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Frame = -3 Query: 243 ELMSWQVTPRPR-SSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRS--LTMPPT 73 E + W + RP+ V PS+ +++ S + P W+P+ P+ +T P Sbjct: 565 EYLEWPLKKRPKWKRVLPSLLKKSQAVLSQPTAHLPQERPASWSPKSAPILPGVVTSPEL 624 Query: 72 P 70 P Sbjct: 625 P 625
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -3 Query: 219 PRPRSSVTPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNIF 61 P P++S P+ T +PK T+P + +PP T PPTP ++ Sbjct: 107 PPPKASTPPTYTPSPKP---------PATKPPTYPTPKPPA---TKPPTPPVY 147
>TBX10_MOUSE (Q810F8) T-box transcription factor TBX10 (T-box protein 10)| Length = 385 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -3 Query: 234 SWQVTPRPRSSV--TPSMTVAPKSLKSSAFLRMRTTEPLRWAPRRPPVRSLTMPPTPNI 64 SW VTPRP S+ +++P LK SA T++ + R P + P P++ Sbjct: 257 SWPVTPRPLLSIPARSRSSLSPCLLKGSAEREKDTSKASASSSRTPTQPHNQLLPAPDV 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,841,538 Number of Sequences: 219361 Number of extensions: 455373 Number of successful extensions: 2337 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2240 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2318 length of database: 80,573,946 effective HSP length: 70 effective length of database: 65,218,676 effective search space used: 1565248224 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
