>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 108/131 (82%), Gaps = 3/131 (2%)
 Strand = Plus / Minus

                                                                            
Query: 94       gatggagaacggggagatcgagg---ccgcggaggaggggctgccgatgccggcgccgcc 150
                |||||||||||||||||||||||   | ||||| || ||| ||||| |||| ||||||||
Sbjct: 14187778 gatggagaacggggagatcgagggggcagcggacgacggggtgccggtgcccgcgccgcc 14187719

                                                                            
Query: 151      cgtcgggcgcaggtaccgtcccgtggggtccgacgacagcgccgtcgtccagatgacctc 210
                |  |||  | ||||| || ||||| || |||  |||  |||||||| |||||||||||||
Sbjct: 14187718 caacggcaggaggtatcgccccgtcggctccagcgatcgcgccgtcatccagatgacctc 14187659

                           
Query: 211      catggagcccg 221
                |||||||||||
Sbjct: 14187658 catggagcccg 14187648

>dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0078D03
          Length = 176593

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 108/131 (82%), Gaps = 3/131 (2%)
 Strand = Plus / Minus

                                                                         
Query: 94    gatggagaacggggagatcgagg---ccgcggaggaggggctgccgatgccggcgccgcc 150
             |||||||||||||||||||||||   | ||||| || ||| ||||| |||| ||||||||
Sbjct: 92067 gatggagaacggggagatcgagggggcagcggacgacggggtgccggtgcccgcgccgcc 92008

                                                                         
Query: 151   cgtcgggcgcaggtaccgtcccgtggggtccgacgacagcgccgtcgtccagatgacctc 210
             |  |||  | ||||| || ||||| || |||  |||  |||||||| |||||||||||||
Sbjct: 92007 caacggcaggaggtatcgccccgtcggctccagcgatcgcgccgtcatccagatgacctc 91948

                        
Query: 211   catggagcccg 221
             |||||||||||
Sbjct: 91947 catggagcccg 91937

>dbj|AP004637.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0703C03
          Length = 162620

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 108/131 (82%), Gaps = 3/131 (2%)
 Strand = Plus / Minus

                                                                        
Query: 94   gatggagaacggggagatcgagg---ccgcggaggaggggctgccgatgccggcgccgcc 150
            |||||||||||||||||||||||   | ||||| || ||| ||||| |||| ||||||||
Sbjct: 3334 gatggagaacggggagatcgagggggcagcggacgacggggtgccggtgcccgcgccgcc 3275

                                                                        
Query: 151  cgtcgggcgcaggtaccgtcccgtggggtccgacgacagcgccgtcgtccagatgacctc 210
            |  |||  | ||||| || ||||| || |||  |||  |||||||| |||||||||||||
Sbjct: 3274 caacggcaggaggtatcgccccgtcggctccagcgatcgcgccgtcatccagatgacctc 3215

                       
Query: 211  catggagcccg 221
            |||||||||||
Sbjct: 3214 catggagcccg 3204

>dbj|AK108337.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A07, full
           insert sequence
          Length = 790

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 108/131 (82%), Gaps = 3/131 (2%)
 Strand = Plus / Plus

                                                                       
Query: 94  gatggagaacggggagatcgagg---ccgcggaggaggggctgccgatgccggcgccgcc 150
           |||||||||||||||||||||||   | ||||| || ||| ||||| |||| ||||||||
Sbjct: 449 gatggagaacggggagatcgagggggcagcggacgacggggtgccggtgcccgcgccgcc 508

                                                                       
Query: 151 cgtcgggcgcaggtaccgtcccgtggggtccgacgacagcgccgtcgtccagatgacctc 210
           |  |||  | ||||| || ||||| || |||  |||  |||||||| |||||||||||||
Sbjct: 509 caacggcaggaggtatcgccccgtcggctccagcgatcgcgccgtcatccagatgacctc 568

                      
Query: 211 catggagcccg 221
           |||||||||||
Sbjct: 569 catggagcccg 579

>ref|XM_481609.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2970

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 107/130 (82%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                       
Query: 95  atggagaacggggagatcgagg---ccgcggaggaggggctgccgatgccggcgccgccc 151
           ||||||||||||||||||||||   | ||||| || ||| ||||| |||| |||||||||
Sbjct: 1   atggagaacggggagatcgagggggcagcggacgacggggtgccggtgcccgcgccgccc 60

                                                                       
Query: 152 gtcgggcgcaggtaccgtcccgtggggtccgacgacagcgccgtcgtccagatgacctcc 211
             |||  | ||||| || ||||| || |||  |||  |||||||| ||||||||||||||
Sbjct: 61  aacggcaggaggtatcgccccgtcggctccagcgatcgcgccgtcatccagatgacctcc 120

                     
Query: 212 atggagcccg 221
           ||||||||||
Sbjct: 121 atggagcccg 130

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 74    ccgtcgagaccgcgagccgcga 95
             ||||||||||||||||||||||
Sbjct: 30752 ccgtcgagaccgcgagccgcga 30773

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 20      cgccggcgagcgaccagccgct 41
               ||||||||||||||||||||||
Sbjct: 3627020 cgccggcgagcgaccagccgct 3627041

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 74      ccgtcgagaccgcgagccgcga 95
               ||||||||||||||||||||||
Sbjct: 1390185 ccgtcgagaccgcgagccgcga 1390206

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 74      ccgtcgagaccgcgagccgcga 95
               ||||||||||||||||||||||
Sbjct: 1243664 ccgtcgagaccgcgagccgcga 1243643

>gb|AY104978.1| Zea mays PCO093035 mRNA sequence
          Length = 1846

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 5  ccccgccccgttcgtcgccggcgagc 30
          |||||||||||||||| |||||||||
Sbjct: 65 ccccgccccgttcgtctccggcgagc 90

>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 109    gatcgaggccgcggaggaggggctg 133
              ||||||||||||||| |||||||||
Sbjct: 103346 gatcgaggccgcggacgaggggctg 103370

>ref|XM_546596.2| PREDICTED: Canis familiaris similar to Fragile X mental retardation
           syndrome related protein 2 (LOC489478), mRNA
          Length = 3269

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 218 cccgcccccggcggctccacctccg 242
           |||||||||||||||||| ||||||
Sbjct: 531 cccgcccccggcggctccccctccg 555

>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 116     gccgcggaggaggggctgccg 136
               |||||||||||||||||||||
Sbjct: 1368721 gccgcggaggaggggctgccg 1368701

>gb|U33883.2|BJU33883 Bradyrhizobium japonicum putative epoxide hydrolase EphB (ephB),
            putative stress-induced protein Ohr (ohr), putative
            transmembrane transcriptional regulator protein TtrR
            (ttrR), putative two-component system transcriptional
            response regulator TcsR (tcsR), integral inner membrane
            metabolite transport protein MtbA (mtbA), orf157, and
            orf235 genes, complete cds; Fo ATPase operon, complete
            sequence; probable acetyltransferase PacT (pacT),
            mitochondrial processing peptidase-like protein Mpp
            (mpp), threonine synthase ThrC (thrC), two-component
            system transcriptional regulator ElmR (elmR), putative
            two-component system sensor histidine kinase ElmS (elmS),
            SUR1-like protein (shb1), and orf133 genes, complete cds;
            cox operon, complete sequence; orf177, TldD (tldD),
            signal peptidase SipS (sipS), and orf375 genes, complete
            cds; and putative glutathione synthetase GshA (gshA)
            gene, partial cds
          Length = 31495

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  tgccgatgccggcgccgcccg 152
            |||||||||||||||||||||
Sbjct: 1358 tgccgatgccggcgccgcccg 1378

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 132     tgccgatgccggcgccgcccg 152
               |||||||||||||||||||||
Sbjct: 1313002 tgccgatgccggcgccgcccg 1312982



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 39      gctctatcatcgccgcagcg 58
               ||||||||||||||||||||
Sbjct: 4720290 gctctatcatcgccgcagcg 4720309

>ref|XM_321060.2| Anopheles gambiae str. PEST ENSANGP00000007854 (ENSANGG00000005922),
            partial mRNA
          Length = 1866

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 130  gctgccgatgccggcgccgcc 150
            |||||||||||||||||||||
Sbjct: 1176 gctgccgatgccggcgccgcc 1196

>ref|NM_212202.1| Eremothecium gossypii AFR519Cp (AFR519C), mRNA
          Length = 2463

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 gccgcggaggaggggctgccg 136
           |||||||||||||||||||||
Sbjct: 520 gccgcggaggaggggctgccg 540

>gb|AE011947.1| Xanthomonas axonopodis pv. citri str. 306,  section 325 of 469 of the
             complete genome
          Length = 11250

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ccggcgagcgaccagccgct 41
             ||||||||||||||||||||
Sbjct: 10510 ccggcgagcgaccagccgct 10529

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     cgcccccggcggctccacct 239
               ||||||||||||||||||||
Sbjct: 2010349 cgcccccggcggctccacct 2010330

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 133     gccgatgccggcgccgcccg 152
               ||||||||||||||||||||
Sbjct: 4280311 gccgatgccggcgccgcccg 4280292

>gb|AY040466.1| Quercus cocciferoides internal transcribed spacer 1, 5.8S
          ribosomal RNA gene, and internal transcribed spacer 2,
          complete sequence
          Length = 594

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 56 gcgagcgccccacgctccccgtcg 79
          ||||||||||| ||||||||||||
Sbjct: 66 gcgagcgccccccgctccccgtcg 43

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 133     gccgatgccggcgccgcccg 152
               ||||||||||||||||||||
Sbjct: 2698436 gccgatgccggcgccgcccg 2698455

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 97     ggagaacggggagatcgaggccgcggaggagg 128
              |||||| | ||||| |||||||||||||||||
Sbjct: 284267 ggagaaggtggagagcgaggccgcggaggagg 284298

>gb|AE005130.1| Halobacterium sp. NRC-1 section 161 of 170 of the complete genome
          Length = 11601

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   ccccacgctccccgtcgaga 82
            ||||||||||||||||||||
Sbjct: 3066 ccccacgctccccgtcgaga 3047

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 97      ggagaacggggagatcgaggccgcggaggagg 128
               |||||| | ||||| |||||||||||||||||
Sbjct: 1609410 ggagaaggtggagagcgaggccgcggaggagg 1609379

>dbj|AB048605.1| Thermus thermophilus genes for probable enoyl-CoA hydratase alpha
            subunit, Holliday junction binding protein, hypothetical
            protein, complete cds
          Length = 2210

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 97   ggagaacggggagatcgaggccgcggaggagg 128
            |||||| | ||||| |||||||||||||||||
Sbjct: 1319 ggagaaggtggagagcgaggccgcggaggagg 1350


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,468,969
Number of Sequences: 3902068
Number of extensions: 1468969
Number of successful extensions: 39949
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38772
Number of HSP's gapped (non-prelim): 1172
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)