ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GATA3_XENLA (P23773) GATA-binding factor 3 (Transcription factor... 30 1.7
2NAGAB_MOUSE (Q9QWR8) Alpha-N-acetylgalactosaminidase precursor (... 29 3.7
3PPME1_ASPFU (Q4WKB2) Protein phosphatase methylesterase 1 (EC 3.... 28 8.2

>GATA3_XENLA (P23773) GATA-binding factor 3 (Transcription factor xGATA-3)|
          Length = 435

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 241 PWYFSNAQVSWIGLDSPSRTHAVLCHPSSLSLSAEGMSLCGRGEGIPAWNM 89
           P Y+SN+ V  +    P    +++CHPS L    +G    G      AWN+
Sbjct: 60  PSYYSNS-VRTVPRYPPPHHGSLVCHPSILQSWTDGRKSLGGPHAASAWNL 109



to top

>NAGAB_MOUSE (Q9QWR8) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)|
           (Alpha-galactosidase B)
          Length = 415

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 138 SAEREREEG*HRTACVLDGESNPIQDTCAFEKYHG 242
           S+ RER EG  + A  L+    PI  +C++  Y G
Sbjct: 160 SSSRERAEGYPKMAAALNATGRPIAFSCSWPAYEG 194



to top

>PPME1_ASPFU (Q4WKB2) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 420

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 166 HPSSLSLSAEGMSLCGRGEGIPAWNMLRLVRAQEGEERNSSLSLSWF 26
           HP+  S   +  S+   G  IP+ +     RA +G   +SSLS S F
Sbjct: 31  HPAESSHDEDSSSVSSTGTVIPSPSRQLFARASQGSSDSSSLSWSDF 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,182,407
Number of Sequences: 219361
Number of extensions: 692012
Number of successful extensions: 1473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
to top