ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24f01 |
|---|---|
| Clone Library Name | barley_pub |
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 75 SSLAKPRDKDSRELSRRPAPPPFSQHSGR 161 SS PR +DSR RP PP + GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 75 SSLAKPRDKDSRELSRRPAPPPFSQHSGR 161 SS PR +DSR RP PP + GR Sbjct: 247 SSAQAPRQEDSRPARARPGPPTRGRRRGR 275
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 129 APPPFSQHSGRPGRTIRARIAPPQ 200 APP F + RPG + A +APP+ Sbjct: 882 APPAFPEVRVRPGSALAAAVAPPE 905
>SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)| Length = 580 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = +3 Query: 60 LSPVQSSLAKPRDKDSRELSRRPAPPPFSQHSGRPGRTIRARIAPPQQG 206 LSP S + R S +LSR + +Q S +PG T+ ++ PP QG Sbjct: 469 LSPQSGSPQQQRSPGSPQLSRASSGSSPNQAS-KPGATLASQPRPPVQG 516
>VE4_HPV08 (P06425) Probable protein E4| Length = 229 Score = 27.7 bits (60), Expect = 7.6 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Frame = +3 Query: 66 PVQSSLAKPRDKDSRELSRRPAPPPFSQHSGRPGRTIRARIAP---PQQGP 209 P+Q+S KP+ KD RPA + G GR +AP P GP Sbjct: 46 PLQNSHNKPKPKDEGTGDGRPAEQDRKKSRGDQGRDTAPGLAPGRSPGLGP 96
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 27.7 bits (60), Expect = 7.6 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 10/55 (18%) Frame = +3 Query: 75 SSLAKPRDKDSR--------ELSRRPAPPPFSQHSGRPGRT--IRARIAPPQQGP 209 +S A P K S E R PPP S + R GR+ + A APP GP Sbjct: 71 ASAASPESKPSPGTKGQLRGESDRSKQPPPASSPTKRKGRSRALEAVPAPPASGP 125
>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSQHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSQHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSQHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1| Length = 305 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSQHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related| protein LDC2) Length = 305 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Frame = +3 Query: 78 SLAKPRDKDSRELSRR-PAPPPFSQHSGRPGRTI 176 S +KP +D +E RR P+P P H GR R + Sbjct: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNV 172
>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2| Length = 904 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%) Frame = +2 Query: 83 RKTARQGLAGALAP--------PRSAAVLAA*RSTRAHNPRAHRSAAAGAMSQP 220 RK A + A A AP P +AA A S+ + PRA R A A S+P Sbjct: 173 RKAAEEAAAAASAPAPVADAPTPSAAAPAARSPSSPSSAPRAARPAGASPASRP 226
>IF2_XANAC (Q8PJ55) Translation initiation factor IF-2| Length = 904 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%) Frame = +2 Query: 83 RKTARQGLAGALAP--------PRSAAVLAA*RSTRAHNPRAHRSAAAGAMSQP 220 RK A + A A AP P +AA A S+ + PRA R A A S+P Sbjct: 173 RKAAEEAAAAASAPAPVADAPKPSAAAPAARLPSSPSSAPRAARPAGASPASRP 226
>GELS_DROME (Q07171) Gelsolin precursor| Length = 798 Score = 27.3 bits (59), Expect = 9.9 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 66 PVQSSLAKPRDKDSRELSRRPAPPPFSQHSGRPGRTI 176 PVQS +P ++S++ +RR P F+ PG I Sbjct: 38 PVQSGEIQPSGQNSKQAARRVMHPSFANAGRTPGLEI 74
>SORC1_MOUSE (Q9JLC4) VPS10 domain-containing receptor SorCS1 precursor (mSorCS)| Length = 1167 Score = 27.3 bits (59), Expect = 9.9 Identities = 18/43 (41%), Positives = 21/43 (48%) Frame = +3 Query: 39 FCKRLFLLSPVQSSLAKPRDKDSRELSRRPAPPPFSQHSGRPG 167 F +R+ L SP S A+P D R RPA PP S G G Sbjct: 1121 FKRRVALPSPPSPS-AQPGDSSLRLQRPRPATPPSSPKRGSAG 1162
>CDA_CRYNE (Q53I51) Chitin deacetylase precursor (EC 3.5.1.41)| Length = 410 Score = 27.3 bits (59), Expect = 9.9 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%) Frame = +3 Query: 63 SPVQSSLAKPRDKDSRELSRRPAPPP----FSQHSGRPGRTIRARIAP 194 +P S +PRD D +L RR AP P + + PG T P Sbjct: 19 APFPESWLQPRDSDVSQLFRRGAPDPKASDYLSYYPSPGSTPNVSTIP 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,933,331 Number of Sequences: 219361 Number of extensions: 463934 Number of successful extensions: 1953 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1937 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
