ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 170 2e-39
2dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 2e-39
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 103 3e-19
4dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 103 3e-19
5gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, com... 44 0.27
6gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p2... 44 0.27
7gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p2... 44 0.27
8gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosom... 44 0.27
9gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene... 44 0.27
10emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on ch... 44 0.27
11gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosom... 44 0.27
12dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, ... 44 0.27
13dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, com... 44 0.27
14ref|XM_472252.1| Oryza sativa (japonica cultivar-group), predic... 42 1.1
15gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, comple... 42 1.1
16emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
17gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361... 42 1.1
18ref|NG_004818.1| Gallus gallus cadherin-related neuronal recepto... 42 1.1
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
20emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
21gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, r... 42 1.1
22gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18... 42 1.1
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.2
24gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosom... 40 4.2
25gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosom... 40 4.2
26emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch... 40 4.2
27emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, co... 40 4.2
28emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.2
29gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete se... 40 4.2
30gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide r... 40 4.2
31gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 4.2
32gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 4.2
33gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.2
34gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete... 40 4.2
35dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
36ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219 ... 40 4.2
37emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chr... 40 4.2
38emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chr... 40 4.2
39dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, comp... 40 4.2
40dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, comp... 40 4.2 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  170 bits (86), Expect = 2e-39
 Identities = 104/110 (94%)
 Strand = Plus / Plus

                                                                       
Query: 206 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 265
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                             
Query: 266 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 315
           |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 336
to top
>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
           insert sequence
          Length = 3193

 Score =  170 bits (86), Expect = 2e-39
 Identities = 104/110 (94%)
 Strand = Plus / Plus

                                                                       
Query: 206 gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaagagtactac 265
           |||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||
Sbjct: 227 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactac 286

                                                             
Query: 266 tcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 315
           |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 287 tcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 336
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  103 bits (52), Expect = 3e-19
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                           
Query: 256     agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 315
               |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 5484834 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 5484893



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 206     gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 257
               |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 5484550 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 5484601



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 53       cttcctcctctctcctgttc 72
                ||||||||||||||||||||
Sbjct: 10754361 cttcctcctctctcctgttc 10754380
to top
>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  103 bits (52), Expect = 3e-19
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                          
Query: 256    agagtactactcgccgttcctcggcatcgagaagggtgccgtcctgcaggaggcccgcgt 315
              |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 118815 agagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgt 118874



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 206    gccatgtcgcagccgctcgtcgtgaagaaggacgacgacttagacgaggaag 257
              |||||| |||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 118531 gccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaag 118582
to top
>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 51    ctcttcctcctctctcctgttc 72
             ||||||||||||||||||||||
Sbjct: 22687 ctcttcctcctctctcctgttc 22708
to top
>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 51    ctcttcctcctctctcctgttc 72
             ||||||||||||||||||||||
Sbjct: 93539 ctcttcctcctctctcctgttc 93518
to top
>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence
          Length = 95741

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 51    ctcttcctcctctctcctgttc 72
             ||||||||||||||||||||||
Sbjct: 11821 ctcttcctcctctctcctgttc 11800
to top
>gb|AC135112.5| Mus musculus BAC clone RP23-477F17 from chromosome unknown, complete
              sequence
          Length = 178498

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 50     cctcttcctcctctctcctgttcagtcctc 79
              ||||||||||||||||||| || |||||||
Sbjct: 119184 cctcttcctcctctctcctttttagtcctc 119155
to top
>gb|AY123972.1| Arthrobacter sp. BP2 cyclohexanone oxidation gene cluster, partial
            sequence
          Length = 8975

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 290  ggtgccgtcctgcaggaggccc 311
            ||||||||||||||||||||||
Sbjct: 2711 ggtgccgtcctgcaggaggccc 2690
to top
>emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on chromosome X, complete
              sequence
          Length = 184943

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 50     cctcttcctcctctctcctgttcagtcctc 79
              ||||||||||||||||||| || |||||||
Sbjct: 162198 cctcttcctcctctctcctttttagtcctc 162227
to top
>gb|AC154247.2| Mus musculus BAC clone RP24-176G22 from chromosome 17, complete
             sequence
          Length = 162175

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 63    tctcctgttcagtcctccctcg 84
             ||||||||||||||||||||||
Sbjct: 60120 tctcctgttcagtcctccctcg 60141
to top
>dbj|AB039951.1| Bacillus subtilis yuxH, yuzC, degQ, comQ, comX, comP, comA, yuxO
           genes, partial and complete cds
          Length = 6114

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 104 ctcgcgggagctctcgcgccgc 125
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
to top
>dbj|AB010576.1| Bacillus subtilis ComX, ComQ and DegQ genes, complete cds
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 104 ctcgcgggagctctcgcgccgc 125
           ||||||||||||||||||||||
Sbjct: 516 ctcgcgggagctctcgcgccgc 495
to top
>ref|XM_472252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 120 cgccgccccgctccgccgccg 140
           |||||||||||||||||||||
Sbjct: 180 cgccgccccgctccgccgccg 160
to top
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence
          Length = 187517

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 125    ccccgctccgccgccgttctc 145
              |||||||||||||||||||||
Sbjct: 105985 ccccgctccgccgccgttctc 105965
to top
>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
            complete sequence
          Length = 143093

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 120  cgccgccccgctccgccgccg 140
            |||||||||||||||||||||
Sbjct: 6906 cgccgccccgctccgccgccg 6886
to top
>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence
          Length = 211611

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 50    cctcttcctcctctctcctgt 70
             |||||||||||||||||||||
Sbjct: 75898 cctcttcctcctctctcctgt 75878
to top
>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10)
          Length = 98944

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   ccccgctccgccgccgttctc 145
             |||||||||||||||||||||
Sbjct: 27526 ccccgctccgccgccgttctc 27506
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 120      cgccgccccgctccgccgccg 140
                |||||||||||||||||||||
Sbjct: 18790996 cgccgccccgctccgccgccg 18790976
to top
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
              complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    cgccgccccgctccgccgccg 140
              |||||||||||||||||||||
Sbjct: 140159 cgccgccccgctccgccgccg 140139
to top
>gb|AC008254.7|AC008254 Drosophila melanogaster, chromosome 3R, region 85C-85C, BAC clone
             BACR02G22, complete sequence
          Length = 164982

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 55    tcctcctctctcctgttcagtcctc 79
             |||||||||||||||||| ||||||
Sbjct: 69437 tcctcctctctcctgttctgtcctc 69413
to top
>gb|AE003680.4| Drosophila melanogaster chromosome 3R, section 18 of 118 of the complete
              sequence
          Length = 270517

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 55     tcctcctctctcctgttcagtcctc 79
              |||||||||||||||||| ||||||
Sbjct: 267285 tcctcctctctcctgttctgtcctc 267261
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    cgtcctgcaggaggcccgcg 314
              ||||||||||||||||||||
Sbjct: 506652 cgtcctgcaggaggcccgcg 506671
to top
>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence
          Length = 199991

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     ctcttcctcctctctcctgt 70
              ||||||||||||||||||||
Sbjct: 135518 ctcttcctcctctctcctgt 135537
to top
>gb|AC132100.3| Mus musculus BAC clone RP24-294D10 from chromosome 18, complete
             sequence
          Length = 173949

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    cctcctctctcctgttcagt 75
             ||||||||||||||||||||
Sbjct: 96813 cctcctctctcctgttcagt 96832
to top
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   atcgagaagggtgccgtcct 300
             ||||||||||||||||||||
Sbjct: 23174 atcgagaagggtgccgtcct 23155
to top
>emb|CR848714.6| Wallaby DNA sequence from clone MEKBa-460J13, complete sequence
          Length = 186287

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     ctcttcctcctctctcctgt 70
              ||||||||||||||||||||
Sbjct: 156270 ctcttcctcctctctcctgt 156251
to top
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 128    cgctccgccgccgttctcgcagca 151
              ||||||||||||||||| ||||||
Sbjct: 144708 cgctccgccgccgttcttgcagca 144685
to top
>gb|AC151605.2| Emiliania huxleyi clone JGIACCU-13A3, complete sequence
          Length = 36153

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   tcgcgccgccccgctccgcc 136
             ||||||||||||||||||||
Sbjct: 31314 tcgcgccgccccgctccgcc 31295
to top
>gb|U65510.1|RRU65510 Rhodospirillum rubrum alkyl hydroperoxide reductase (ahpC) gene,
             partial cds; CooM (cooM), CooK (cooK), CooL (cooL), CooX
             (cooX), CooU (cooU), CooH (cooH), iron sulfur protein
             (cooF), carbon monoxide dehydrogenase (cooS), CooC (cooC),
             CooT (cooT), CooJ (cooJ), putative transcriptional
             activator; similar to cAMP-receptor (CAP, CRP) protein:
             PIR Accession Number A26049; similar to fnr (nirR) gene
             product encoded by GenBank Accession Number J01608;
             aspartic acid-rich C-terminus similar to acidic region of
             HMG (high mobility group) protei (cooA), and
             nicotinate-nucleotide pyrophosphorylase (nadC) genes,
             complete cds; L-aspartate oxidase (nadB) gene, partial
             cds; and unknown gene
          Length = 16259

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   gcgccgccccgctccgccgc 138
             ||||||||||||||||||||
Sbjct: 15846 gcgccgccccgctccgccgc 15827
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 119     gcgccgccccgctccgccgc 138
               ||||||||||||||||||||
Sbjct: 1691662 gcgccgccccgctccgccgc 1691643
to top
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     ttcctcggcatcgagaaggg 291
               ||||||||||||||||||||
Sbjct: 1659149 ttcctcggcatcgagaaggg 1659168
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 121     gccgccccgctccgccgccg 140
               ||||||||||||||||||||
Sbjct: 2744303 gccgccccgctccgccgccg 2744322
to top
>gb|AC104648.2| Homo sapiens BAC clone RP11-45D4 from 2, complete sequence
          Length = 112084

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ttcctcctctctcctgttca 73
             ||||||||||||||||||||
Sbjct: 47456 ttcctcctctctcctgttca 47475
to top
>dbj|AP005260.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0557D09
          Length = 135315

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    cttcctcctctctcctgttc 72
             ||||||||||||||||||||
Sbjct: 83807 cttcctcctctctcctgttc 83826
to top
>ref|XM_313144.2| Anopheles gambiae str. PEST ENSANGP00000013219
           (ENSANGG00000010730), partial mRNA
          Length = 1333

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 281 atcgagaagggtgccgtcctgcag 304
           ||||| ||||||||||||||||||
Sbjct: 657 atcgataagggtgccgtcctgcag 634
to top
>emb|AL590430.8| Mouse DNA sequence from clone RP23-384K10 on chromosome 2, complete
             sequence
          Length = 144909

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tcttcctcctctctcctgtt 71
             ||||||||||||||||||||
Sbjct: 38565 tcttcctcctctctcctgtt 38546
to top
>emb|AL732513.8| Mouse DNA sequence from clone RP23-344B24 on chromosome 2, complete
             sequence
          Length = 209452

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    gcctcttcctcctctctcct 68
             ||||||||||||||||||||
Sbjct: 54386 gcctcttcctcctctctcct 54405
to top
>dbj|AB046872.1| Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds
          Length = 2207

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  cgcctcttcctcctctctcc 67
           ||||||||||||||||||||
Sbjct: 918 cgcctcttcctcctctctcc 899
to top
>dbj|AB059356.1| Physcomitrella patens Sig2 gene for PpSIG2, complete cds
          Length = 3439

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   cgcctcttcctcctctctcc 67
            ||||||||||||||||||||
Sbjct: 1427 cgcctcttcctcctctctcc 1408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,272,766
Number of Sequences: 3902068
Number of extensions: 2272766
Number of successful extensions: 64331
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63890
Number of HSP's gapped (non-prelim): 441
length of query: 318
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 296
effective length of database: 17,147,199,772
effective search space: 5075571132512
effective search space used: 5075571132512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top