ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR405682.23| Zebrafish DNA sequence from clone DKEYP-67E6 in... 42 0.37
2emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in ... 40 1.5
3emb|BX511311.24| Zebrafish DNA sequence from clone DKEY-278G4 in... 40 1.5
4emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in ... 40 1.5
5emb|CR381537.13| Zebrafish DNA sequence from clone DKEYP-9F9 in ... 40 1.5
6emb|BX548042.7| Zebrafish DNA sequence from clone DKEY-146L4 in ... 40 1.5
7emb|AL953848.17| Zebrafish DNA sequence from clone CH211-244K5 i... 40 1.5
8gb|AF055171.1|AF055171 Haemonchus contortus clone IBD-pns65 P-gl... 40 1.5
9emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, ... 40 1.5
10emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 i... 40 1.5
11emb|CR450709.12| Zebrafish DNA sequence from clone CH211-249J24 ... 40 1.5
12emb|BX927341.21| Zebrafish DNA sequence from clone DKEY-56J1 in ... 40 1.5
13gb|AC121094.8| Mus musculus chromosome 18, clone RP24-322I3, com... 38 5.8
14gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 38 5.8
15gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome ... 38 5.8
16emb|CR716135.2|CNS0GFIR Tetraodon nigroviridis full-length cDNA 38 5.8
17emb|CR847821.11| Zebrafish DNA sequence from clone DKEY-87I10 in... 38 5.8
18emb|AL512303.10| Human DNA sequence from clone RP1-249I4 on chro... 38 5.8
19gb|AC158238.2| Mus musculus BAC clone RP23-106F10 from chromosom... 38 5.8
20gb|AY119085.1| Drosophila melanogaster LP11136 full insert cDNA 38 5.8
21ref|NM_137209.2| Drosophila melanogaster CG8214-RA (CG8214), mRNA 38 5.8
22gb|AC008799.6| Homo sapiens chromosome 5 clone CTD-2061E19, comp... 38 5.8
23gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52... 38 5.8
24gb|AC008923.9| Homo sapiens chromosome 5 clone CTD-2281D19, comp... 38 5.8
25emb|BX933591.2| Gallus gallus finished cDNA, clone ChEST662b21 38 5.8
26dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.8
27emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in... 38 5.8
28gb|AC151548.3| Macropus eugenii clone ME_KBa-603H10, complete se... 38 5.8
29ref|XM_316678.1| Anopheles gambiae str. PEST ENSANGP00000011350 ... 38 5.8
30gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41... 38 5.8
31gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, r... 38 5.8
32emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4,... 38 5.8
33emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4,... 38 5.8

>emb|CR405682.23| Zebrafish DNA sequence from clone DKEYP-67E6 in linkage group 12,
              complete sequence
          Length = 192457

 Score = 42.1 bits (21), Expect = 0.37
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     gccgacctgctgctccgcctc 84
              |||||||||||||||||||||
Sbjct: 164642 gccgacctgctgctccgcctc 164662



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>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete
              sequence
          Length = 242558

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 133762 ccgacctgctgctccgcctc 133781



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>emb|BX511311.24| Zebrafish DNA sequence from clone DKEY-278G4 in linkage group 8,
            complete sequence
          Length = 242845

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   ccgacctgctgctccgcctc 84
            ||||||||||||||||||||
Sbjct: 3318 ccgacctgctgctccgcctc 3337



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>emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in linkage group 6, complete
              sequence
          Length = 233655

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 124894 ccgacctgctgctccgcctc 124913



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>emb|CR381537.13| Zebrafish DNA sequence from clone DKEYP-9F9 in linkage group 14, complete
              sequence
          Length = 184228

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 175423 ccgacctgctgctccgcctc 175404



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>emb|BX548042.7| Zebrafish DNA sequence from clone DKEY-146L4 in linkage group 20
             Contains a novel gene and four CpG islands, complete
             sequence
          Length = 224072

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    ccgacctgctgctccgcctc 84
             ||||||||||||||||||||
Sbjct: 34346 ccgacctgctgctccgcctc 34365



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>emb|AL953848.17| Zebrafish DNA sequence from clone CH211-244K5 in linkage group 6,
              complete sequence
          Length = 201360

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 150473 ccgacctgctgctccgcctc 150454



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>gb|AF055171.1|AF055171 Haemonchus contortus clone IBD-pns65 P-glycoprotein mRNA, partial
           cds
          Length = 297

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  gctcgattcacacgaccttc 106
           ||||||||||||||||||||
Sbjct: 51  gctcgattcacacgaccttc 70



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>emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, complete sequence
          Length = 164682

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 142694 ccgacctgctgctccgcctc 142675



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>emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 in linkage group 4,
              complete sequence
          Length = 166476

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 112332 ccgacctgctgctccgcctc 112313



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>emb|CR450709.12| Zebrafish DNA sequence from clone CH211-249J24 in linkage group 11,
              complete sequence
          Length = 157745

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 153710 ccgacctgctgctccgcctc 153691



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>emb|BX927341.21| Zebrafish DNA sequence from clone DKEY-56J1 in linkage group 14, complete
              sequence
          Length = 203575

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     ccgacctgctgctccgcctc 84
              ||||||||||||||||||||
Sbjct: 187112 ccgacctgctgctccgcctc 187131



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>gb|AC121094.8| Mus musculus chromosome 18, clone RP24-322I3, complete sequence
          Length = 164629

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 99    cgaccttcccctgccattcccat 121
             |||||||||||||||||| ||||
Sbjct: 80117 cgaccttcccctgccatttccat 80095



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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 5       ccctacttcctccctactc 23
               |||||||||||||||||||
Sbjct: 1090949 ccctacttcctccctactc 1090931



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>gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome 1, complete sequence
          Length = 213412

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      ctcccctacttcctcccta 20
              |||||||||||||||||||
Sbjct: 133690 ctcccctacttcctcccta 133708



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>emb|CR716135.2|CNS0GFIR Tetraodon nigroviridis full-length cDNA
          Length = 572

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  ccgacctgctgctccgcct 83
           |||||||||||||||||||
Sbjct: 224 ccgacctgctgctccgcct 242



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>emb|CR847821.11| Zebrafish DNA sequence from clone DKEY-87I10 in linkage group 14,
              complete sequence
          Length = 167652

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     ccgacctgctgctccgcct 83
              |||||||||||||||||||
Sbjct: 134898 ccgacctgctgctccgcct 134916



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>emb|AL512303.10| Human DNA sequence from clone RP1-249I4 on chromosome 6 Contains the
             KIAA0441 gene and a putative novel gene, complete sequence
          Length = 106408

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 102   ccttcccctgccattcccatgtc 124
             |||||| ||||||||||||||||
Sbjct: 74839 ccttccactgccattcccatgtc 74817



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>gb|AC158238.2| Mus musculus BAC clone RP23-106F10 from chromosome 9, complete sequence
          Length = 242356

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     tccctactctactctactc 33
              |||||||||||||||||||
Sbjct: 152235 tccctactctactctactc 152217



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>gb|AY119085.1| Drosophila melanogaster LP11136 full insert cDNA
          Length = 1501

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 68  acctgctgctccgcctccg 86
           |||||||||||||||||||
Sbjct: 370 acctgctgctccgcctccg 352



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>ref|NM_137209.2| Drosophila melanogaster CG8214-RA (CG8214), mRNA
          Length = 1495

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 68  acctgctgctccgcctccg 86
           |||||||||||||||||||
Sbjct: 370 acctgctgctccgcctccg 352



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>gb|AC008799.6| Homo sapiens chromosome 5 clone CTD-2061E19, complete sequence
          Length = 123098

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 100   gaccttcccctgccattcccatg 122
             |||||||||||||||||| ||||
Sbjct: 21111 gaccttcccctgccattctcatg 21089



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>gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52B-52C, BAC clone
             BACR11I22, complete sequence
          Length = 173165

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    acctgctgctccgcctccg 86
             |||||||||||||||||||
Sbjct: 70408 acctgctgctccgcctccg 70426



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>gb|AC008923.9| Homo sapiens chromosome 5 clone CTD-2281D19, complete sequence
          Length = 151031

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 100   gaccttcccctgccattcccatg 122
             |||||||||||||||||| ||||
Sbjct: 29373 gaccttcccctgccattctcatg 29395



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>emb|BX933591.2| Gallus gallus finished cDNA, clone ChEST662b21
          Length = 1569

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   actcccctacttcctccct 19
           |||||||||||||||||||
Sbjct: 473 actcccctacttcctccct 491



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4,
              complete sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ctactctactctactccag 36
              |||||||||||||||||||
Sbjct: 430040 ctactctactctactccag 430022



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>emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in linkage group 2,
              complete sequence
          Length = 194313

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     gacctgctgctccgcctcc 85
              |||||||||||||||||||
Sbjct: 189399 gacctgctgctccgcctcc 189381



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>gb|AC151548.3| Macropus eugenii clone ME_KBa-603H10, complete sequence
          Length = 111549

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ccctacttcctccctactc 23
             |||||||||||||||||||
Sbjct: 28262 ccctacttcctccctactc 28244



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>ref|XM_316678.1| Anopheles gambiae str. PEST ENSANGP00000011350 (ENSANGG00000008861),
            partial mRNA
          Length = 2310

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 68   acctgctgctccgcctccg 86
            |||||||||||||||||||
Sbjct: 1703 acctgctgctccgcctccg 1685



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>gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41 of 73 of the
            complete sequence
          Length = 262533

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 68   acctgctgctccgcctccg 86
            |||||||||||||||||||
Sbjct: 8300 acctgctgctccgcctccg 8318



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>gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, region 52C1-52C2, P1 clone
             DS08438, complete sequence
          Length = 74901

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    acctgctgctccgcctccg 86
             |||||||||||||||||||
Sbjct: 10664 acctgctgctccgcctccg 10682



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>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23,
              complete sequence
          Length = 115972

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ctactctactctactccag 36
              |||||||||||||||||||
Sbjct: 114699 ctactctactctactccag 114681



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>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
             complete sequence
          Length = 130249

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    ctactctactctactccag 36
             |||||||||||||||||||
Sbjct: 68792 ctactctactctactccag 68774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 794,396
Number of Sequences: 3902068
Number of extensions: 794396
Number of successful extensions: 57350
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57270
Number of HSP's gapped (non-prelim): 80
length of query: 124
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 103
effective length of database: 17,151,101,840
effective search space: 1766563489520
effective search space used: 1766563489520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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