Clone Name | bastl24e12 |
---|---|
Clone Library Name | barley_pub |
>emb|CR405682.23| Zebrafish DNA sequence from clone DKEYP-67E6 in linkage group 12, complete sequence Length = 192457 Score = 42.1 bits (21), Expect = 0.37 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 gccgacctgctgctccgcctc 84 ||||||||||||||||||||| Sbjct: 164642 gccgacctgctgctccgcctc 164662
>emb|BX088589.14| Zebrafish DNA sequence from clone DKEY-27E7 in linkage group 12, complete sequence Length = 242558 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 133762 ccgacctgctgctccgcctc 133781
>emb|BX511311.24| Zebrafish DNA sequence from clone DKEY-278G4 in linkage group 8, complete sequence Length = 242845 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 3318 ccgacctgctgctccgcctc 3337
>emb|BX293997.14| Zebrafish DNA sequence from clone DKEY-15L7 in linkage group 6, complete sequence Length = 233655 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 124894 ccgacctgctgctccgcctc 124913
>emb|CR381537.13| Zebrafish DNA sequence from clone DKEYP-9F9 in linkage group 14, complete sequence Length = 184228 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 175423 ccgacctgctgctccgcctc 175404
>emb|BX548042.7| Zebrafish DNA sequence from clone DKEY-146L4 in linkage group 20 Contains a novel gene and four CpG islands, complete sequence Length = 224072 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 34346 ccgacctgctgctccgcctc 34365
>emb|AL953848.17| Zebrafish DNA sequence from clone CH211-244K5 in linkage group 6, complete sequence Length = 201360 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 150473 ccgacctgctgctccgcctc 150454
>gb|AF055171.1|AF055171 Haemonchus contortus clone IBD-pns65 P-glycoprotein mRNA, partial cds Length = 297 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gctcgattcacacgaccttc 106 |||||||||||||||||||| Sbjct: 51 gctcgattcacacgaccttc 70
>emb|BX000463.19| Zebrafish DNA sequence from clone CH211-266I2, complete sequence Length = 164682 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 142694 ccgacctgctgctccgcctc 142675
>emb|AL935186.22| Zebrafish DNA sequence from clone CH211-250M6 in linkage group 4, complete sequence Length = 166476 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 112332 ccgacctgctgctccgcctc 112313
>emb|CR450709.12| Zebrafish DNA sequence from clone CH211-249J24 in linkage group 11, complete sequence Length = 157745 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 153710 ccgacctgctgctccgcctc 153691
>emb|BX927341.21| Zebrafish DNA sequence from clone DKEY-56J1 in linkage group 14, complete sequence Length = 203575 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccgacctgctgctccgcctc 84 |||||||||||||||||||| Sbjct: 187112 ccgacctgctgctccgcctc 187131
>gb|AC121094.8| Mus musculus chromosome 18, clone RP24-322I3, complete sequence Length = 164629 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 99 cgaccttcccctgccattcccat 121 |||||||||||||||||| |||| Sbjct: 80117 cgaccttcccctgccatttccat 80095
>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold Length = 1996640 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ccctacttcctccctactc 23 ||||||||||||||||||| Sbjct: 1090949 ccctacttcctccctactc 1090931
>gb|AC126044.4| Mus musculus BAC clone RP23-12O8 from chromosome 1, complete sequence Length = 213412 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 ctcccctacttcctcccta 20 ||||||||||||||||||| Sbjct: 133690 ctcccctacttcctcccta 133708
>emb|CR716135.2|CNS0GFIR Tetraodon nigroviridis full-length cDNA Length = 572 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ccgacctgctgctccgcct 83 ||||||||||||||||||| Sbjct: 224 ccgacctgctgctccgcct 242
>emb|CR847821.11| Zebrafish DNA sequence from clone DKEY-87I10 in linkage group 14, complete sequence Length = 167652 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 ccgacctgctgctccgcct 83 ||||||||||||||||||| Sbjct: 134898 ccgacctgctgctccgcct 134916
>emb|AL512303.10| Human DNA sequence from clone RP1-249I4 on chromosome 6 Contains the KIAA0441 gene and a putative novel gene, complete sequence Length = 106408 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 102 ccttcccctgccattcccatgtc 124 |||||| |||||||||||||||| Sbjct: 74839 ccttccactgccattcccatgtc 74817
>gb|AC158238.2| Mus musculus BAC clone RP23-106F10 from chromosome 9, complete sequence Length = 242356 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 tccctactctactctactc 33 ||||||||||||||||||| Sbjct: 152235 tccctactctactctactc 152217
>gb|AY119085.1| Drosophila melanogaster LP11136 full insert cDNA Length = 1501 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 acctgctgctccgcctccg 86 ||||||||||||||||||| Sbjct: 370 acctgctgctccgcctccg 352
>ref|NM_137209.2| Drosophila melanogaster CG8214-RA (CG8214), mRNA Length = 1495 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 acctgctgctccgcctccg 86 ||||||||||||||||||| Sbjct: 370 acctgctgctccgcctccg 352
>gb|AC008799.6| Homo sapiens chromosome 5 clone CTD-2061E19, complete sequence Length = 123098 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 100 gaccttcccctgccattcccatg 122 |||||||||||||||||| |||| Sbjct: 21111 gaccttcccctgccattctcatg 21089
>gb|AC099005.1| Drosophila melanogaster, chromosome 2R, region 52B-52C, BAC clone BACR11I22, complete sequence Length = 173165 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acctgctgctccgcctccg 86 ||||||||||||||||||| Sbjct: 70408 acctgctgctccgcctccg 70426
>gb|AC008923.9| Homo sapiens chromosome 5 clone CTD-2281D19, complete sequence Length = 151031 Score = 38.2 bits (19), Expect = 5.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 100 gaccttcccctgccattcccatg 122 |||||||||||||||||| |||| Sbjct: 29373 gaccttcccctgccattctcatg 29395
>emb|BX933591.2| Gallus gallus finished cDNA, clone ChEST662b21 Length = 1569 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 actcccctacttcctccct 19 ||||||||||||||||||| Sbjct: 473 actcccctacttcctccct 491
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 ctactctactctactccag 36 ||||||||||||||||||| Sbjct: 430040 ctactctactctactccag 430022
>emb|BX323807.8| Zebrafish DNA sequence from clone DKEY-154P10 in linkage group 2, complete sequence Length = 194313 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 gacctgctgctccgcctcc 85 ||||||||||||||||||| Sbjct: 189399 gacctgctgctccgcctcc 189381
>gb|AC151548.3| Macropus eugenii clone ME_KBa-603H10, complete sequence Length = 111549 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ccctacttcctccctactc 23 ||||||||||||||||||| Sbjct: 28262 ccctacttcctccctactc 28244
>ref|XM_316678.1| Anopheles gambiae str. PEST ENSANGP00000011350 (ENSANGG00000008861), partial mRNA Length = 2310 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 acctgctgctccgcctccg 86 ||||||||||||||||||| Sbjct: 1703 acctgctgctccgcctccg 1685
>gb|AE003809.3| Drosophila melanogaster chromosome 2R, section 41 of 73 of the complete sequence Length = 262533 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acctgctgctccgcctccg 86 ||||||||||||||||||| Sbjct: 8300 acctgctgctccgcctccg 8318
>gb|AC005474.1|AC005474 Drosophila melanogaster, chromosome 2R, region 52C1-52C2, P1 clone DS08438, complete sequence Length = 74901 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acctgctgctccgcctccg 86 ||||||||||||||||||| Sbjct: 10664 acctgctgctccgcctccg 10682
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 ctactctactctactccag 36 ||||||||||||||||||| Sbjct: 114699 ctactctactctactccag 114681
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 38.2 bits (19), Expect = 5.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 ctactctactctactccag 36 ||||||||||||||||||| Sbjct: 68792 ctactctactctactccag 68774 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 794,396 Number of Sequences: 3902068 Number of extensions: 794396 Number of successful extensions: 57350 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57270 Number of HSP's gapped (non-prelim): 80 length of query: 124 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 103 effective length of database: 17,151,101,840 effective search space: 1766563489520 effective search space used: 1766563489520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)