ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 51 9e-07
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 51 9e-07
3PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) ... 28 6.0
4PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pkn... 28 7.9
5PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pkn... 28 7.9
6SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 28 7.9
7RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5 28 7.9

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 207 MLPRKREIVAGEVEDLQKKTRGGEG 281
           MLPRKREIVAGEVEDLQKKTR GEG
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEG 25



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 207 MLPRKREIVAGEVEDLQKKTRGGEG 281
           MLPRKREIVAGEVEDLQKKTR GEG
Sbjct: 1   MLPRKREIVAGEVEDLQKKTRAGEG 25



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>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)|
          Length = 1388

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 73   VASGKEAGEGRSV*GFWDGTGGPD 2
            V +GK  G+G++V GF DGT   D
Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384



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>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
 Frame = +3

Query: 9   PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 101
           PP PSQ P   R +PA+ P  T         G +  SRRS
Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319



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>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
 Frame = +3

Query: 9   PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 101
           PP PSQ P   R +PA+ P  T         G +  SRRS
Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319



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>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 258

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 48  SPASFPDATGESKVSRRSHALDLT 119
           +P    DATGE  V+R SHA D+T
Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195



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>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5|
          Length = 187

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -3

Query: 200 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 30
           R+   +  D R R E     D    + R  + V+  +  GFA  V  G +RG V  G
Sbjct: 4   RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,931,619
Number of Sequences: 219361
Number of extensions: 529728
Number of successful extensions: 2061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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