ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 377 e-101
2gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 285 4e-74
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 58 2e-05
5emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 58 2e-05
6emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 58 2e-05
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.060
8dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.060
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.060
10emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.060
11gb|AY597048.1| Oncorhynchus mykiss macrophage myristoylated alan... 44 0.24
12emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosy... 44 0.24
13dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.24
14gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 0.93
15gb|AF202898.1|AF202898 Streptomyces coelicolor A3(2) type I poly... 42 0.93
16gb|DQ333391.1| Cervid herpesvirus 2 glycoprotein C gene, complet... 42 0.93
17ref|XM_475618.1| Oryza sativa (japonica cultivar-group), predic... 40 3.7
18ref|XM_468450.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
19ref|XM_507059.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 3.7
20ref|XM_468451.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
21gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 3.7
22gb|AY657515.1| Synthetic construct Peudomonas aeruginosa clone F... 40 3.7
23ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA 40 3.7
24gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 3.7
25gb|AC154402.2| Mus musculus BAC clone RP24-235N24 from chromosom... 40 3.7
26ref|XM_749626.1| Aspergillus fumigatus Af293 AP-1 adaptor comple... 40 3.7
27emb|CR724841.1|CNS0GM8F Tetraodon nigroviridis full-length cDNA 40 3.7
28gb|DQ352994.1| Apomyrma stygia voucher RA0120 abdominal-A (AbdA)... 40 3.7
29gb|DQ352869.1| Pachycondyla stigma voucher RA0243 abdominal-A (A... 40 3.7
30gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, co... 40 3.7
31emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.7
32gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell... 40 3.7
33gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell... 40 3.7
34gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell... 40 3.7
35dbj|AK094080.1| Homo sapiens cDNA FLJ36761 fis, clone UTERU2018884 40 3.7
36gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, co... 40 3.7
37ref|NM_176328.1| Drosophila melanogaster CG17364-RB, transcript ... 40 3.7
38ref|NM_140417.2| Drosophila melanogaster CG17364-RA, transcript ... 40 3.7
39gb|AY094951.1| Drosophila melanogaster RH68811 full insert cDNA 40 3.7
40gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 3.7
41dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
43gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 3.7
44dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.7
45gb|AE004563.1| Pseudomonas aeruginosa PAO1, section 124 of 529 o... 40 3.7
46gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.7
47dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
48dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
49dbj|AK101218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
50dbj|AK071390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
51dbj|AK062205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
52dbj|AK060561.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
53gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49... 40 3.7
54gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.7
55gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.7
56emb|CT009762.8| Mouse DNA sequence from clone RP23-211O9 on chro... 40 3.7
57gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
58dbj|D45381.1| Carassius auratus mRNA for AMPA-type glutamate rec... 40 3.7
59gb|U12018.1|CAU12018 Carassius auratus glutamate receptor 4 (glu... 40 3.7
60dbj|AB028740.1| Mus musculus drba gene for drebrin A, partial cds 40 3.7 
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  377 bits (190), Expect = e-101
 Identities = 237/254 (93%), Gaps = 9/254 (3%)
 Strand = Plus / Plus

                                                                       
Query: 39  gaccgtccctcgcctgcttccttccccgacgcgacaggcgaatccaaggtttcgcggcgg 98
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6   gaccgtcgctcgcctgcttccttcaccgacgcgacaggcgaatccaaggtttcgcggcgg 65

                                                                       
Query: 99  ---------tcgcacgcgctggatctgacgcggcagctcccggcggccgtctactactgc 149
                    | ||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 66  ttgcggccctagcacgcgctggatctgacgcggcagctcccggcggccgcgtactactgc 125

                                                                       
Query: 150 ctgctcttcgctgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatg 209
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctgctcttcgctgcgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatg 185

                                                                       
Query: 210 cttccccggaagcgggagatcgtcgccggcgaggtcgaggacttgcagaagaaaacccgc 269
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 186 cttccccggaagcgggagatcgtcgccggcgaggtcgaggacttgcagaagaagacccgc 245

                         
Query: 270 ggcggggaggggga 283
           | ||||||||||||
Sbjct: 246 gccggggaggggga 259
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>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  285 bits (144), Expect = 4e-74
 Identities = 173/180 (96%), Gaps = 2/180 (1%)
 Strand = Plus / Plus

                                                                       
Query: 101 gcacgcgctggatctgacgcggcagctcccggcggccgtctactactgcctgctcttcgc 160
           ||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||
Sbjct: 174 gcacgcgctggatctgacgcg-cagctcccggcggccgcgtactactgcctgctcttcgc 232

                                                                       
Query: 161 tgcgtcggcggccgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaa 220
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 233 tgcgtcggcggccgtcctcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaa 291

                                                                       
Query: 221 gcgggagatcgtcgccggcgaggtcgaggacttgcagaagaaaacccgcggcggggaggg 280
           |||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct: 292 gcgggagatcgtcgccggcgaggtcgaggacttgcagaagaagacccgtgccggggaggg 351



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 66/73 (90%), Gaps = 5/73 (6%)
 Strand = Plus / Plus

                                                                      
Query: 17 cccatcccagaaaccctagacggaccgtccctcgcctgctt-ccttccccgacgcgacag 75
          |||| ||||||||||||||||    |||| ||||||||||| ||||||||||||||||||
Sbjct: 8  cccagcccagaaaccctagac----cgtcgctcgcctgctttccttccccgacgcgacag 63

                       
Query: 76 gcgaatccaaggt 88
          |||||||||||||
Sbjct: 64 gcgaatccaaggt 76
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                          
Query: 178    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 237
              |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259

                                               
Query: 238    gcgaggtcgaggacttgcagaagaaaacccgcg 270
              |||||||| | |||||||| ||||| |||||||
Sbjct: 300258 gcgaggtccacgacttgcacaagaagacccgcg 300226



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    ctggatctgacgcggcagctc 128
              |||||||||||||||||||||
Sbjct: 300382 ctggatctgacgcggcagctc 300362
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                          
Query: 178    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 237
              |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 300318 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 300259

                                               
Query: 238    gcgaggtcgaggacttgcagaagaaaacccgcg 270
              |||||||| | |||||||| ||||| |||||||
Sbjct: 300258 gcgaggtccacgacttgcacaagaagacccgcg 300226



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    ctggatctgacgcggcagctc 128
              |||||||||||||||||||||
Sbjct: 300382 ctggatctgacgcggcagctc 300362
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 77/93 (82%)
 Strand = Plus / Plus

                                                                        
Query: 178  tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 237
            |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 4675 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 4734

                                             
Query: 238  gcgaggtcgaggacttgcagaagaaaacccgcg 270
            |||||||| | |||||||| ||||| |||||||
Sbjct: 4735 gcgaggtccacgacttgcacaagaagacccgcg 4767



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  ctggatctgacgcggcagctc 128
            |||||||||||||||||||||
Sbjct: 4611 ctggatctgacgcggcagctc 4631
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 77/93 (82%)
 Strand = Plus / Minus

                                                                        
Query: 178  tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 237
            |||| ||||||||||||| |   | |||||||||| |||| |||||||||    ||||||
Sbjct: 7636 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggagctcgccg 7577

                                             
Query: 238  gcgaggtcgaggacttgcagaagaaaacccgcg 270
            |||||||| | |||||||| ||||| |||||||
Sbjct: 7576 gcgaggtccacgacttgcacaagaagacccgcg 7544



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 108  ctggatctgacgcggcagctc 128
            |||||||||||||||||||||
Sbjct: 7700 ctggatctgacgcggcagctc 7680
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 81/97 (83%), Gaps = 5/97 (5%)
 Strand = Plus / Minus

                                                                          
Query: 178    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 236
              |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228

                                                   
Query: 237    ggcgaggtcg---aggacttgcagaagaaaacccgcg 270
              ||||||||||   | |||||||| ||||| |||||||
Sbjct: 317227 ggcgaggtcgtccacgacttgcacaagaagacccgcg 317191



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    ctggatctgacgcggcagctc 128
              |||||||||||||||||||||
Sbjct: 317350 ctggatctgacgcggcagctc 317330
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>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
           insert sequence
          Length = 3724

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 81/97 (83%), Gaps = 5/97 (5%)
 Strand = Plus / Plus

                                                                       
Query: 178 tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 236
           |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 289 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 347

                                                
Query: 237 ggcgaggtcg---aggacttgcagaagaaaacccgcg 270
           ||||||||||   | |||||||| ||||| |||||||
Sbjct: 348 ggcgaggtcgtccacgacttgcacaagaagacccgcg 384



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 108 ctggatctgacgcggcagctc 128
           |||||||||||||||||||||
Sbjct: 225 ctggatctgacgcggcagctc 245
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 81/97 (83%), Gaps = 5/97 (5%)
 Strand = Plus / Minus

                                                                          
Query: 178    tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 236
              |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 317286 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 317228

                                                   
Query: 237    ggcgaggtcg---aggacttgcagaagaaaacccgcg 270
              ||||||||||   | |||||||| ||||| |||||||
Sbjct: 317227 ggcgaggtcgtccacgacttgcacaagaagacccgcg 317191



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    ctggatctgacgcggcagctc 128
              |||||||||||||||||||||
Sbjct: 317350 ctggatctgacgcggcagctc 317330
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 81/97 (83%), Gaps = 5/97 (5%)
 Strand = Plus / Minus

                                                                         
Query: 178   tcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagcgggag-atcgtcgcc 236
             |||| ||||||||||||| |   | |||||||||| |||| ||||||||| ||| |||||
Sbjct: 50337 tcggcctcctcggcggcgccctacactatatgcttacccgcaagcgggaggatc-tcgcc 50279

                                                  
Query: 237   ggcgaggtcg---aggacttgcagaagaaaacccgcg 270
             ||||||||||   | |||||||| ||||| |||||||
Sbjct: 50278 ggcgaggtcgtccacgacttgcacaagaagacccgcg 50242



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 108   ctggatctgacgcggcagctc 128
             |||||||||||||||||||||
Sbjct: 50401 ctggatctgacgcggcagctc 50381
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>gb|AY597048.1| Oncorhynchus mykiss macrophage myristoylated alanine-rich C
           kinase-like protein mRNA, complete cds
          Length = 1307

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 176 cctcgggctcctcggcggcgtc 197
           ||||||||||||||||||||||
Sbjct: 389 cctcgggctcctcggcggcgtc 368
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>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster
          Length = 84985

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 173  cgtcctcgggctcctcggcggc 194
            ||||||||||||||||||||||
Sbjct: 8332 cgtcctcgggctcctcggcggc 8353
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 172     ccgtcctcgggctcctcggcggcgtc 197
               |||||||||||| |||||||||||||
Sbjct: 4787528 ccgtcctcgggcgcctcggcggcgtc 4787503
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 231     gtcgccggcgaggtcgaggac 251
               |||||||||||||||||||||
Sbjct: 4504569 gtcgccggcgaggtcgaggac 4504549



 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 224    ggagatcgtcgccggcgaggtcgag 248
              |||||||||||||| ||||||||||
Sbjct: 404648 ggagatcgtcgccgccgaggtcgag 404672
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>gb|AF202898.1|AF202898 Streptomyces coelicolor A3(2) type I polyketide synthase gene,
            partial cds
          Length = 2203

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 171  gccgtcctcgggctcctcggc 191
            |||||||||||||||||||||
Sbjct: 1431 gccgtcctcgggctcctcggc 1411
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>gb|DQ333391.1| Cervid herpesvirus 2 glycoprotein C gene, complete cds
          Length = 1522

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 179  cgggctcctcggcggcgtcgcgcgc 203
            |||||||||||||| ||||||||||
Sbjct: 1188 cgggctcctcggcgccgtcgcgcgc 1164
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>ref|XM_475618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 atcgtcgccggcgaggtcga 247
           ||||||||||||||||||||
Sbjct: 48  atcgtcgccggcgaggtcga 67
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>ref|XM_468450.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 390

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 220 agcgggagatcgtcgccggcgagg 243
           |||||||| |||||||||||||||
Sbjct: 248 agcgggaggtcgtcgccggcgagg 225
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>ref|XM_507059.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474F11.28-1
           mRNA
          Length = 2304

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 agcgggagatcgtcgccggcgagg 243
           |||||||| |||||||||||||||
Sbjct: 79  agcgggaggtcgtcgccggcgagg 102
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>ref|XM_468451.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2049

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 agcgggagatcgtcgccggcgagg 243
           |||||||| |||||||||||||||
Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 83      caaggtttcgcggcggtcgc 102
               ||||||||||||||||||||
Sbjct: 1950645 caaggtttcgcggcggtcgc 1950626
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>gb|AY657515.1| Synthetic construct Peudomonas aeruginosa clone FLH040573.01F
           PA1340 gene, partial cds
          Length = 669

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 174 gtcctcgggctcctcggcggcgtcgcgc 201
           ||||||||  ||||||||||||||||||
Sbjct: 76  gtcctcggcgtcctcggcggcgtcgcgc 103
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>ref|NM_020964.2| Homo sapiens KIAA1632 (KIAA1632), mRNA
          Length = 12715

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tctactactgcctgctcttc 158
             ||||||||||||||||||||
Sbjct: 11976 tctactactgcctgctcttc 11995
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      caaggtttcgcggcggtcgc 102
               ||||||||||||||||||||
Sbjct: 1480472 caaggtttcgcggcggtcgc 1480491
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>gb|AC154402.2| Mus musculus BAC clone RP24-235N24 from chromosome 13, complete sequence
          Length = 145213

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      cctccagtcccatcccagaa 28
              ||||||||||||||||||||
Sbjct: 106545 cctccagtcccatcccagaa 106564
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>ref|XM_749626.1| Aspergillus fumigatus Af293 AP-1 adaptor complex subunit beta
           (Afu3g08970) partial mRNA
          Length = 2241

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 acttgcagaagaaaacccgc 269
           ||||||||||||||||||||
Sbjct: 985 acttgcagaagaaaacccgc 966
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>emb|CR724841.1|CNS0GM8F Tetraodon nigroviridis full-length cDNA
          Length = 2168

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 260 gaaaacccgcggcggggagg 279
           ||||||||||||||||||||
Sbjct: 85  gaaaacccgcggcggggagg 104
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>gb|DQ352994.1| Apomyrma stygia voucher RA0120 abdominal-A (AbdA) gene, partial cds
          Length = 531

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 ggctcctcggcggcgtcgcgcgct 204
           |||||||||||||||||| |||||
Sbjct: 358 ggctcctcggcggcgtcgagcgct 381
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>gb|DQ352869.1| Pachycondyla stigma voucher RA0243 abdominal-A (AbdA) gene, partial
           cds
          Length = 648

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 ggctcctcggcggcgtcgcgcgct 204
           |||||||||||||||||| |||||
Sbjct: 361 ggctcctcggcggcgtcgagcgct 384
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>gb|AC087685.9| Homo sapiens chromosome 18, clone RP11-618K16, complete sequence
          Length = 155807

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   tctactactgcctgctcttc 158
             ||||||||||||||||||||
Sbjct: 39017 tctactactgcctgctcttc 39036
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      caaggtttcgcggcggtcgc 102
               ||||||||||||||||||||
Sbjct: 1367581 caaggtttcgcggcggtcgc 1367600
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>gb|AC093502.2| Drosophila melanogaster 3L BAC RP98-48C4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 166249

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gtcgccggcgaggtcgagga 250
             ||||||||||||||||||||
Sbjct: 85552 gtcgccggcgaggtcgagga 85571
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>gb|AC010031.8| Drosophila melanogaster 3L BAC RP98-2M20 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 173509

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gtcgccggcgaggtcgagga 250
             ||||||||||||||||||||
Sbjct: 17561 gtcgccggcgaggtcgagga 17580
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>gb|AC104703.3| Drosophila melanogaster 3L BAC RP98-35M1 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185404

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    gtcgccggcgaggtcgagga 250
              ||||||||||||||||||||
Sbjct: 134007 gtcgccggcgaggtcgagga 134026
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>dbj|AK094080.1| Homo sapiens cDNA FLJ36761 fis, clone UTERU2018884
          Length = 3017

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 139  tctactactgcctgctcttc 158
            ||||||||||||||||||||
Sbjct: 2296 tctactactgcctgctcttc 2315
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>gb|AC090355.9| Homo sapiens chromosome 18, clone RP11-745C22, complete sequence
          Length = 186783

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   tctactactgcctgctcttc 158
             ||||||||||||||||||||
Sbjct: 17512 tctactactgcctgctcttc 17493
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>ref|NM_176328.1| Drosophila melanogaster CG17364-RB, transcript variant B (CG17364),
            mRNA
          Length = 2631

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  gtcgccggcgaggtcgagga 250
            ||||||||||||||||||||
Sbjct: 1338 gtcgccggcgaggtcgagga 1357
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>ref|NM_140417.2| Drosophila melanogaster CG17364-RA, transcript variant A (CG17364),
            mRNA
          Length = 2415

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 231  gtcgccggcgaggtcgagga 250
            ||||||||||||||||||||
Sbjct: 1338 gtcgccggcgaggtcgagga 1357
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>gb|AY094951.1| Drosophila melanogaster RH68811 full insert cDNA
          Length = 2014

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 gtcgccggcgaggtcgagga 250
           ||||||||||||||||||||
Sbjct: 708 gtcgccggcgaggtcgagga 727
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    gccgtcctcgggctcctcgg 190
              ||||||||||||||||||||
Sbjct: 474763 gccgtcctcgggctcctcgg 474744
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     atcgtcgccggcgaggtcga 247
               ||||||||||||||||||||
Sbjct: 3364388 atcgtcgccggcgaggtcga 3364407
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 220      agcgggagatcgtcgccggcgagg 243
                |||||||| |||||||||||||||
Sbjct: 35299137 agcgggaggtcgtcgccggcgagg 35299160
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 227     gatcgtcgccggcgaggtcg 246
               ||||||||||||||||||||
Sbjct: 1961521 gatcgtcgccggcgaggtcg 1961502
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    gacggaccgtccctcgcctg 54
             ||||||||||||||||||||
Sbjct: 86184 gacggaccgtccctcgcctg 86203
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>gb|AE004563.1| Pseudomonas aeruginosa PAO1, section 124 of 529 of the complete
            genome
          Length = 9937

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 174  gtcctcgggctcctcggcggcgtcgcgc 201
            ||||||||  ||||||||||||||||||
Sbjct: 7753 gtcctcggcgtcctcggcggcgtcgcgc 7726
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     cggcagctcccggcggccgt 139
               ||||||||||||||||||||
Sbjct: 2129561 cggcagctcccggcggccgt 2129542
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>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1119_A01
          Length = 108727

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 220   agcgggagatcgtcgccggcgagg 243
             |||||||| |||||||||||||||
Sbjct: 49471 agcgggaggtcgtcgccggcgagg 49494
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>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0474F11
          Length = 139544

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 220    agcgggagatcgtcgccggcgagg 243
              |||||||| |||||||||||||||
Sbjct: 111187 agcgggaggtcgtcgccggcgagg 111210
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>dbj|AK101218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031C13, full
           insert sequence
          Length = 1728

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 atcgtcgccggcgaggtcga 247
           ||||||||||||||||||||
Sbjct: 116 atcgtcgccggcgaggtcga 135
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>dbj|AK071390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093H07, full
           insert sequence
          Length = 2304

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 agcgggagatcgtcgccggcgagg 243
           |||||||| |||||||||||||||
Sbjct: 79  agcgggaggtcgtcgccggcgagg 102
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>dbj|AK062205.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H02, full
           insert sequence
          Length = 2049

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 220 agcgggagatcgtcgccggcgagg 243
           |||||||| |||||||||||||||
Sbjct: 112 agcgggaggtcgtcgccggcgagg 135
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>dbj|AK060561.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G04, full
           insert sequence
          Length = 1730

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 atcgtcgccggcgaggtcga 247
           ||||||||||||||||||||
Sbjct: 115 atcgtcgccggcgaggtcga 134
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>gb|AE003536.4| Drosophila melanogaster chromosome 3L, section 49 of 83 of the complete
              sequence
          Length = 350428

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    gtcgccggcgaggtcgagga 250
              ||||||||||||||||||||
Sbjct: 242559 gtcgccggcgaggtcgagga 242540
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 177     ctcgggctcctcggcggcgtcgcg 200
               |||||||| |||||||||||||||
Sbjct: 2637365 ctcgggctgctcggcggcgtcgcg 2637388
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 162     gcgtcggcggccgtcctcgggctc 185
               |||||||||||| |||||||||||
Sbjct: 1756399 gcgtcggcggccatcctcgggctc 1756422
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>emb|CT009762.8| Mouse DNA sequence from clone RP23-211O9 on chromosome 13, complete
             sequence
          Length = 229171

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     cctccagtcccatcccagaa 28
             ||||||||||||||||||||
Sbjct: 58389 cctccagtcccatcccagaa 58370
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>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05,
              complete sequence
          Length = 167317

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    atcgtcgccggcgaggtcga 247
              ||||||||||||||||||||
Sbjct: 158212 atcgtcgccggcgaggtcga 158231
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>dbj|D45381.1| Carassius auratus mRNA for AMPA-type glutamate receptor, partial cds
          Length = 2703

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  gccgtcctcgggctcctcgg 190
            ||||||||||||||||||||
Sbjct: 1731 gccgtcctcgggctcctcgg 1712
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>gb|U12018.1|CAU12018 Carassius auratus glutamate receptor 4 (glur4) mRNA, partial cds
          Length = 3613

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  gccgtcctcgggctcctcgg 190
            ||||||||||||||||||||
Sbjct: 1731 gccgtcctcgggctcctcgg 1712
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>dbj|AB028740.1| Mus musculus drba gene for drebrin A, partial cds
          Length = 20387

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     cctccagtcccatcccagaa 28
             ||||||||||||||||||||
Sbjct: 20315 cctccagtcccatcccagaa 20296


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,886,825
Number of Sequences: 3902068
Number of extensions: 1886825
Number of successful extensions: 43120
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41392
Number of HSP's gapped (non-prelim): 1715
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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