ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24d04 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 148 bits (374), Expect = 3e-36 Identities = 75/76 (98%), Positives = 76/76 (100%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 MLLGGLIDTLTGANKSARLKGTVVLMRK+VLDLNDFGATIIDGIGEFLGKGVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 287 AVDQDNGGRGKVGAEA 334 AVDQDNGGRGKVGAEA Sbjct: 61 AVDQDNGGRGKVGAEA 76
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 130 bits (328), Expect = 6e-31 Identities = 62/75 (82%), Positives = 72/75 (96%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+IDT+TG++K +RLKGTVVLMRK+VLDLNDFGAT+IDG+GEFLGKGVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 290 VDQDNGGRGKVGAEA 334 VD +NG RGKVGAEA Sbjct: 61 VDPNNGNRGKVGAEA 75
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 110 bits (275), Expect = 9e-25 Identities = 53/75 (70%), Positives = 66/75 (88%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGG+I LTG NK+ARLKG++VLMRK+ LD+NDFGAT+IDGI EFLG+GVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 290 VDQDNGGRGKVGAEA 334 VD +NG RG+VG EA Sbjct: 60 VDPNNGNRGRVGTEA 74
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 78.2 bits (191), Expect = 5e-15 Identities = 38/75 (50%), Positives = 53/75 (70%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 +LGGL D LTG N + ++KG VLM + +LD DF A+++D + E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 290 VDQDNGGRGKVGAEA 334 DQ+N GRG VG+EA Sbjct: 60 ADQNNEGRGIVGSEA 74
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 75.9 bits (185), Expect = 2e-14 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 6/82 (7%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSA----RLKGTVVLMRKDVLDLNDFGATIIDGIGEFLG--KGVTC 268 M + G D LTG NK A R++GT VL++KDVL L DF A+++DG+ LG +GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 269 QLISSTAVDQDNGGRGKVGAEA 334 +L+S+TA D NGGRGK+G A Sbjct: 61 RLVSATARDPSNGGRGKLGKPA 82
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 75.1 bits (183), Expect = 4e-14 Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 3/78 (3%) Frame = +2 Query: 110 LLGGLIDTLTGANKSA---RLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLIS 280 + G L D LTG ++KGTVVLM+K+VLD NDF A+ +D + EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 281 STAVDQDNGGRGKVGAEA 334 S D +NG +GK+G A Sbjct: 61 SDVTDSENGSKGKLGKAA 78
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 62.4 bits (150), Expect = 3e-10 Identities = 33/76 (43%), Positives = 52/76 (68%) Frame = +2 Query: 107 MLLGGLIDTLTGANKSARLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISST 286 M LGG++D + G + ++KG V+LM+K+VLD + GA+++DGI + LG+ V+ QLIS Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISG- 59 Query: 287 AVDQDNGGRGKVGAEA 334 +V+ D G GK+ A Sbjct: 60 SVNYD-GLEGKLSNPA 74
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 57.8 bits (138), Expect = 7e-09 Identities = 33/70 (47%), Positives = 45/70 (64%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 289 L+GGLI G + S ++KGTVV+M+K+ LD D ++ D I E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 290 VDQDNGGRGK 319 D NG +GK Sbjct: 62 SDPANGLQGK 71
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 53.5 bits (127), Expect = 1e-07 Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 18/80 (22%) Frame = +2 Query: 146 NKSARLKGTVVLMRKDVLDLN--------------DFGATII----DGIGEFLGKGVTCQ 271 NK +++GTVVLMRK+VLD N D G II DG+ FLG+ V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 272 LISSTAVDQDNGGRGKVGAE 331 LIS+T D G+GKVG + Sbjct: 70 LISAT--KSDANGKGKVGKD 87
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 51.2 bits (121), Expect = 6e-07 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 13/73 (17%) Frame = +2 Query: 146 NKSARLKGTVVLMRKDVLDLN-------------DFGATIIDGIGEFLGKGVTCQLISST 286 N+ ++KGTVVLMRK+VLD+N D + +D + FLG+ V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 287 AVDQDNGGRGKVG 325 D G+GK+G Sbjct: 70 KPDAT--GKGKLG 80
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 51.2 bits (121), Expect = 6e-07 Identities = 27/60 (45%), Positives = 38/60 (63%) Frame = +2 Query: 140 GANKSARLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGK 319 G + S ++KGTVV+M K+VLD D ++ I + LG+ V+ QLISS D NG +GK Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/58 (46%), Positives = 40/58 (68%) Frame = +2 Query: 158 RLKGTVVLMRKDVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAE 331 ++KGTVVLM K+ L++N G+ + D + FLG+ V+ QLIS+T D G+GKVG + Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKD 61
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 48.9 bits (115), Expect = 3e-06 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 13/85 (15%) Frame = +2 Query: 110 LLGGLIDTLTGANKSARLKGTVVLMRKDVLDLN-------------DFGATIIDGIGEFL 250 +LGGL+ ++ ++KGTVVLMRK+VL +N D + +D + FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 251 GKGVTCQLISSTAVDQDNGGRGKVG 325 G+ V+ QLIS+T D + G+GK+G Sbjct: 55 GRPVSLQLISATKADAN--GKGKLG 77
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 46.2 bits (108), Expect = 2e-05 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 20/82 (24%) Frame = +2 Query: 149 KSARLKGTVVLMRKDVLDLN--------------------DFGATIIDGIGEFLGKGVTC 268 + +LKGTV+LM+K+VLD+N +IID FLG+ V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 269 QLISSTAVDQDNGGRGKVGAEA 334 +LIS+T D G+GKV EA Sbjct: 68 RLISATVADA--SGKGKVSKEA 87
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 45.1 bits (105), Expect = 5e-05 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 22/84 (26%) Frame = +2 Query: 146 NKSARLKGTVVLMRKDVLDLNDF------------------GATIIDGI----GEFLGKG 259 +K ++KGTVVLM K+VLD N G +++ G+ FLG+ Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 260 VTCQLISSTAVDQDNGGRGKVGAE 331 ++ QLIS+T D G GKVG E Sbjct: 66 ISMQLISAT--QTDGSGNGKVGKE 87
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 43.9 bits (102), Expect = 1e-04 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 13/72 (18%) Frame = +2 Query: 149 KSARLKGTVVLMRKDVLDLNDF---GATIIDGIGEFLGKGV----------TCQLISSTA 289 K ++KGT+V+M+K+VLD+N G + G+G F+G V + QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLG-FIGSAVDALTFAATKISIQLISATK 65 Query: 290 VDQDNGGRGKVG 325 D GG+GK+G Sbjct: 66 AD---GGKGKIG 74
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 43.1 bits (100), Expect = 2e-04 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 22/84 (26%) Frame = +2 Query: 146 NKSARLKGTVVLMRKDVLDLNDFGAT----------------------IIDGIGEFLGKG 259 N+ ++KGTVVLM K+V D N+F +T I+DG + Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 260 VTCQLISSTAVDQDNGGRGKVGAE 331 + QLIS+T D G GKVG + Sbjct: 66 IAIQLISATKT--DGLGNGKVGKQ 87
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 42.7 bits (99), Expect = 2e-04 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 18/76 (23%) Frame = +2 Query: 158 RLKGTVVLMRKDVLDLNDFG------------------ATIIDGIGEFLGKGVTCQLISS 283 ++KGTVVLMRK+VLD N + +D + FLG+ V QLIS+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISA 77 Query: 284 TAVDQDNGGRGKVGAE 331 T + G+GKVG + Sbjct: 78 TKPLAN--GKGKVGKD 91
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 31.2 bits (69), Expect = 0.67 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 131 TLTGANKSARLKGTVVLMRKDVLDLNDFGATI 226 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>SCA4_RICAU (Q9AJ64) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa| antigen) (Protein PS 120) (Fragment) Length = 991 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +2 Query: 89 EEAKNKMLLGGLIDTLTGANKSARLKGTVVLMRKDVLDLNDF-GATIIDGIGEFLGKGVT 265 ++ + + G+ DT+ +N S + KGT+++ D ++ ++ A +G L KGV Sbjct: 526 DDTSRAVAIDGITDTVIKSNLSTKDKGTMLIAVGDKVNASELSNAEKQQLLGSVLKKGVE 585 Query: 266 CQLIS 280 Q++S Sbjct: 586 TQVLS 590
>DOF52_ARATH (Q93ZL5) Dof zinc finger protein DOF5.2 (AtDOF5.2)| Length = 457 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -2 Query: 324 PTFPRPPLSWSTAVELISWQVTP 256 P FP PP +W A +SW + P Sbjct: 286 PCFPGPPPTWPYAWNGVSWTILP 308 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,796,973 Number of Sequences: 219361 Number of extensions: 557059 Number of successful extensions: 1307 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1271 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1297 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
