ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24c12 |
|---|---|
| Clone Library Name | barley_pub |
>PHBC_CHRVI (P45370) Poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-)| (Poly(3-hydroxybutyrate) polymerase) (PHB polymerase) (PHB synthase) (Poly(3-hydroxyalkanoate) polymerase) (PHA polymerase) (PHA synthase) (Polyhydroxyalkanoic acid synthase) Length = 355 Score = 34.3 bits (77), Expect = 0.079 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = -2 Query: 221 GQKYFAIVDKCTQKTKGTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTGQSSGGRVTMG 42 GQKY +VD K + ++E W + GE R + + + G +GG V G Sbjct: 223 GQKYVNMVDLLDDPDKVKNFLRMEKWIFDSPDQAGETFRQFIKDFYQNNGFLNGGVVLGG 282 Query: 41 EEVEKQRVS 15 +EV+ + ++ Sbjct: 283 QEVDLKDIT 291
>PASK_HUMAN (Q96RG2) PAS domain-containing serine/threonine-protein kinase (EC| 2.7.11.1) (PAS-kinase) (PASKIN) (hPASK) Length = 1323 Score = 32.0 bits (71), Expect = 0.39 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = -2 Query: 173 GTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTGQSSGGRVTMGEEVEK 27 G G R ++PWQG GG+D R + A GG V +E+ K Sbjct: 416 GCGERTLDPWQGQDPAEGGQDPRINVVLA--------GGHVVPRDEIRK 456
>PHBC_THIVI (P45366) Poly-beta-hydroxybutyrate polymerase (EC 2.3.1.-)| (Poly(3-hydroxybutyrate) polymerase) (PHB polymerase) (PHB synthase) (Poly(3-hydroxyalkanoate) polymerase) (PHA polymerase) (PHA synthase) (Polyhydroxyalkanoic acid synthase) Length = 355 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/68 (26%), Positives = 30/68 (44%) Frame = -2 Query: 221 GQKYFAIVDKCTQKTKGTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTGQSSGGRVTMG 42 GQKY +VD K + ++E W + GE R + + G +GG G Sbjct: 222 GQKYVNMVDMLDDPDKVKNFLRMEKWIFDSPDQAGETFRQFTKDFYQKNGFINGGVKLGG 281 Query: 41 EEVEKQRV 18 +E++ + V Sbjct: 282 KEIDLKNV 289
>CP74A_ARATH (Q96242) Cytochrome P450 74A, chloroplast precursor (EC 4.2.1.92)| (Allene oxide synthase) (Hydroperoxide dehydrase) Length = 518 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = -2 Query: 167 GYRQVEPWQGSRSQRGGEDGRDRLAEARRGTGQSSGGRVTMGEEVEKQRVSR 12 G + + P R R G +RLAE R +S+GG +TMG +EK +++ Sbjct: 325 GMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMG-AIEKMELTK 375
>DDX50_MOUSE (Q99MJ9) ATP-dependent RNA helicase DDX50 (EC 3.6.1.-) (DEAD box| protein 50) (Nucleolar protein Gu2) (Gu-beta) Length = 734 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Frame = -2 Query: 248 DTRVRQSRHGQ-KYFAIVDKCTQKTKGTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTG 72 +T R+ + G F+I ++ + KG G + P Q ++ +G+D +A+AR GTG Sbjct: 125 ETLTREQKEGAFSNFSISEETIKLLKGRGVTYLFPIQ-VKTFGPVYEGKDLIAQARTGTG 183 Query: 71 QSSGGRVTMGEEVEKQRVSRK 9 ++ + + E +++ + + K Sbjct: 184 KTFSFAIPLIERLQRNQETIK 204
>EGR4_RAT (Q00911) Early growth response protein 4 (EGR-4) (Early response| protein NGFI-C) (Nerve growth factor-induced protein C) (NGFI-C) Length = 478 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 Query: 113 LPRLAASDCPARAPPDGNPFLSSSVYTC 196 LPRL A D P+ A G FLS ++ TC Sbjct: 28 LPRLPARDAPSAAAYPGGDFLSWALSTC 55
>DDX50_HUMAN (Q9BQ39) ATP-dependent RNA helicase DDX50 (EC 3.6.1.-) (DEAD box| protein 50) (Nucleolar protein Gu2) (Gu-beta) Length = 737 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = -2 Query: 248 DTRVRQSRHGQ-KYFAIVDKCTQKTKGTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTG 72 +T R+ + G F I ++ + KG G + P Q ++ +G+D +A+AR GTG Sbjct: 128 ETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQ-VKTFGPVYEGKDLIAQARTGTG 186 Query: 71 QSSGGRVTMGEEVEKQRVSRK 9 ++ + + E +++ + + K Sbjct: 187 KTFSFAIPLIERLQRNQETIK 207
>FOS_TETFL (Q91496) Proto-oncogene protein c-fos (Cellular oncogene fos)| Length = 374 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +2 Query: 113 LPRLAASDCPARAPPDGNPFLSSSVYTCQLWQNISA---HDDFDELWCPV 253 L LA ++ PD N LSSS+YT Q W+ + A DF+ L PV Sbjct: 274 LDLLAKTEVETVEVPDVN--LSSSLYTAQDWEPLHATIGSSDFEPLCTPV 321
>PYP2_SCHPO (P32586) Tyrosine-protein phosphatase 2 (EC 3.1.3.48)| (Protein-tyrosine phosphatase 2) (PTPase 2) Length = 711 Score = 28.5 bits (62), Expect = 4.3 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Frame = -2 Query: 311 EVPYKPIEELCSCGSQPWG*PDTRVRQSRHGQKYFAIVDKCTQKTKG-TGYRQVEPWQGS 135 E+PY PI SC S PD QK F IV Q+T R V + S Sbjct: 243 EMPYFPISPAISCASSCPSTPDE--------QKNFFIVGNAPQQTPARPSLRSVPSYPSS 294 Query: 134 RSQRGGEDGRDR 99 +QR R R Sbjct: 295 NNQRRPSASRVR 306
>DDX21_HUMAN (Q9NR30) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucleolar RNA| helicase II) (Nucleolar RNA helicase Gu) (RH II/Gu) (Gu-alpha) (DEAD box protein 21) Length = 783 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/77 (25%), Positives = 37/77 (48%) Frame = -2 Query: 239 VRQSRHGQKYFAIVDKCTQKTKGTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTGQSSG 60 V Q F I ++ + KG G + P Q +++ G+D +A+AR GTG++ Sbjct: 181 VEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQ-AKTFHHVYSGKDLIAQARTGTGKTFS 239 Query: 59 GRVTMGEEVEKQRVSRK 9 + + E++ + RK Sbjct: 240 FAIPLIEKLHGELQDRK 256
>POLG_TBEVW (P14336) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 173 GTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTGQSSGGRVTM 45 G G + E + S +Q E R L +A GTG +S G++T+ Sbjct: 1643 GNGLKTNETYVSSIAQGEAEKSRPNLPQAVVGTGWTSKGQITV 1685
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 173 GTGYRQVEPWQGSRSQRGGEDGRDRLAEARRGTGQSSGGRVTM 45 G G + E + S +Q E R L +A GTG +S G++T+ Sbjct: 1643 GNGLKTNETYVSSIAQGEAEKSRPNLPQAVVGTGWTSKGQITV 1685
>CRU3_BRANA (P33525) Cruciferin CRU1 precursor (11S globulin) (12S storage| protein) [Contains: Cruciferin CRU1 alpha chain; Cruciferin CRU1 beta chain] Length = 509 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = -2 Query: 167 GYRQVEPWQGSRSQRG--GEDGRDRLAEARRGTGQSSGGRVTMGEEVEKQR 21 G +Q +PWQG + Q+G G+ G+ + ++G G + G++ ++Q+ Sbjct: 125 GQQQGQPWQGQQGQQGQQGQQGQ----QGQQGQQGQQGQQGQQGQQGQQQQ 171
>PHF10_HUMAN (Q8WUB8) PHD finger protein 10 (XAP135)| Length = 410 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -2 Query: 119 GEDGRDRLAEARRGTGQSSGGRVTMGE 39 GEDGR +GT SS G V+ GE Sbjct: 216 GEDGRGDEKRKNKGTSDSSSGNVSEGE 242
>CD2L5_MOUSE (Q69ZA1) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)| (CDC2-related protein kinase 5) Length = 1511 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = -2 Query: 125 RGGEDGRDRLAEARRGTGQSSGGRVTMGEEVEKQRVSRK 9 R G G +R A+ G+ SSGGR SRK Sbjct: 234 RHGHSGEERAEAAKSGSSSSSGGRRKSASATSSSSSSRK 272
>T2_MOUSE (Q06666) Octapeptide-repeat protein T2| Length = 185 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Frame = -2 Query: 161 RQVEPWQGSRSQRGGEDGRDRLAEARRG-TGQSSGGRVT---MGEEVEKQRVSRK 9 R+ E +G ++R E R+R E +RG + GR G E EKQR R+ Sbjct: 97 REAERQRGREAEREAERQRERQRERQRGREAERQRGREAERQRGREAEKQRGERQ 151
>EGR4_MOUSE (Q9WUF2) Early growth response protein 4 (EGR-4)| Length = 478 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 113 LPRLAASDCPARAPPDGNPFLSSSVYTC 196 LPRL A D P+ A G FLS ++ +C Sbjct: 28 LPRLPARDAPSAAAYPGGDFLSWALSSC 55
>RS5_MYCTU (P66574) 30S ribosomal protein S5| Length = 220 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -1 Query: 63 GRESDDGRGSREAEGE 16 GR D GRGSRE +GE Sbjct: 23 GRRRDSGRGSRERDGE 38
>RS5_MYCBO (P66575) 30S ribosomal protein S5| Length = 220 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/16 (68%), Positives = 12/16 (75%) Frame = -1 Query: 63 GRESDDGRGSREAEGE 16 GR D GRGSRE +GE Sbjct: 23 GRRRDSGRGSRERDGE 38
>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin| binding protein I) (Protein phosphatase 1 regulatory subunit 9A) Length = 1098 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -2 Query: 185 QKTKGTGYRQVEPWQGSRSQRGGEDGRDRLA 93 +K K G + W GS+S RG D D L+ Sbjct: 162 KKEKAGGSEPQDEWGGSKSNRGSTDSLDSLS 192
>DLGD_SALTY (Q8ZL83) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 27.3 bits (59), Expect = 9.7 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 21/93 (22%) Frame = -3 Query: 325 ELKIKKYHINRSRNCV----------------LAALNHGVDRTPEFVKVVMGRNILP*LT 194 ELK Y + RSRN +HGV+R P F++ + +I+P Sbjct: 7 ELKGAFYRVLRSRNIAEDTADECAEMFARTTESGVYSHGVNRFPRFIQQLDNGDIIP--- 63 Query: 193 SVHRRRKERVT-----VRWSPGRAVARSEAGKM 110 + +RVT +W RA+ A KM Sbjct: 64 ---DAKPQRVTSLGAIEQWDAQRAIGNLTAKKM 93
>DLGD_SALTI (Q8Z2C5) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 27.3 bits (59), Expect = 9.7 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 21/93 (22%) Frame = -3 Query: 325 ELKIKKYHINRSRNCV----------------LAALNHGVDRTPEFVKVVMGRNILP*LT 194 ELK Y + RSRN +HGV+R P F++ + +I+P Sbjct: 7 ELKGAFYRVLRSRNIAEDTADACAEMFARTTESGVYSHGVNRFPRFIQQLDNGDIIP--- 63 Query: 193 SVHRRRKERVT-----VRWSPGRAVARSEAGKM 110 + +RVT +W RA+ A KM Sbjct: 64 ---DAKPQRVTSLGAIEQWDAQRAIGNLTAKKM 93
>DLGD_SALPA (Q5PLN6) 2,3-diketo-L-gulonate reductase (EC 1.1.1.130) (2,3-DKG| reductase) (3-dehydro-L-gulonate 2-dehydrogenase) Length = 332 Score = 27.3 bits (59), Expect = 9.7 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 21/93 (22%) Frame = -3 Query: 325 ELKIKKYHINRSRNCV----------------LAALNHGVDRTPEFVKVVMGRNILP*LT 194 ELK Y + RSRN +HGV+R P F++ + +I+P Sbjct: 7 ELKGAFYRVLRSRNIAEDTADACAEMFARTTESGVYSHGVNRFPRFIQQLDNGDIIP--- 63 Query: 193 SVHRRRKERVT-----VRWSPGRAVARSEAGKM 110 + +RVT +W RA+ A KM Sbjct: 64 ---DAKPQRVTSLGAIEQWDAQRAIGNLTAKKM 93 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,582,849 Number of Sequences: 219361 Number of extensions: 776518 Number of successful extensions: 2966 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2884 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2964 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
