ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24c09 |
|---|---|
| Clone Library Name | barley_pub |
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 173 bits (439), Expect = 8e-44 Identities = 83/111 (74%), Positives = 92/111 (82%) Frame = +2 Query: 53 MDSEDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYCTAHGENATFIA 232 M+ +DF PEGGKLPE KLDARQAQGFISFFKKLP+DPRA+RLFDRRDY TAHGENATFIA Sbjct: 1 MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA 60 Query: 233 KAYYHTMTALRQLXXXXXXXXXXXXXRAMFETIARNLLLDRTDHTLELYEG 385 + YYHTM+ALRQL +AMFETIARN+LL+RTD TLELYEG Sbjct: 61 RTYYHTMSALRQLGSSSDGILSASVSKAMFETIARNILLERTDCTLELYEG 111
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 144 bits (362), Expect = 7e-35 Identities = 69/103 (66%), Positives = 78/103 (75%) Frame = +2 Query: 77 EGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYCTAHGENATFIAKAYYHTMT 256 E KLPELKLDA+QAQGF+SF+K LP D RA+R FDR+DY TAHGEN+ FIAK YYHT T Sbjct: 7 EQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTT 66 Query: 257 ALRQLXXXXXXXXXXXXXRAMFETIARNLLLDRTDHTLELYEG 385 ALRQL R MFETIAR+LLL+R DHT+ELYEG Sbjct: 67 ALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEG 109
>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2| Length = 937 Score = 63.9 bits (154), Expect = 9e-11 Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%) Frame = +2 Query: 92 PELKLDARQAQGFISFFKKLPK-DPRAIRLFDRRDYCTAHGENATFIAKAYYHTMTALRQ 268 PELK+D GFI F+K LP+ AIR+FDR D+ TAHG++ATFIA+ Y T + +RQ Sbjct: 5 PELKVD--DEHGFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62 Query: 269 L 271 L Sbjct: 63 L 63
>MSH2_CERAE (Q5XXB5) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 54.3 bits (129), Expect = 7e-08 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLX 274 L+L++ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ + Sbjct: 9 LQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 XXXXXXXXXXXXRAM-FETIARNLLLDRTDHTLELYE 382 M FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104
>MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 935 Score = 53.9 bits (128), Expect = 9e-08 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLX 274 L+L+ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ + Sbjct: 9 LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 XXXXXXXXXXXXRAM-FETIARNLLLDRTDHTLELYE 382 M FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104
>MSH2_HUMAN (P43246) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 53.5 bits (127), Expect = 1e-07 Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLX 274 L+L++ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ + Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 XXXXXXXXXXXXRAM-FETIARNLLLDRTDHTLELYE 382 M FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYK 104
>MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 52.0 bits (123), Expect = 3e-07 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLX 274 L+LD+ GF+ FF+ +P+ P +RLFDR D+ TAH E+A A+ + T ++ + Sbjct: 9 LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68 Query: 275 XXXXXXXXXXXXRAM-FETIARNLLLDRTDHTLELYE 382 M FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYK 104
>MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 50.4 bits (119), Expect = 1e-06 Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLX 274 L+L+ GF+ FF+ +P+ P + LFDR D+ TAHGE+A A+ + T ++ + Sbjct: 9 LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 XXXXXXXXXXXXRAM-FETIARNLLLDRTDHTLELYE 382 M FE+ ++LLL R + +E+Y+ Sbjct: 69 PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYK 104
>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2| Length = 982 Score = 49.3 bits (116), Expect = 2e-06 Identities = 19/44 (43%), Positives = 33/44 (75%) Frame = +2 Query: 134 SFFKKLPKDPRAIRLFDRRDYCTAHGENATFIAKAYYHTMTALR 265 +F++K+PKD +R+FDR ++ A GE+A+F+A+ YHT + L+ Sbjct: 20 NFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLK 63
>MSH2_YEAST (P25847) DNA mismatch repair protein MSH2| Length = 964 Score = 47.0 bits (110), Expect = 1e-05 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Frame = +2 Query: 92 PELKL-DARQAQGFISFFKKLPKDP-RAIRLFDRRDYCTAHGENATFIAKAYYHTMTALR 265 PELK D + + F + LPK P + IRL D+ DY T G +A F+A + YHT + L+ Sbjct: 6 PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65
>MSH2_DROME (P43248) DNA mismatch repair protein spellchecker 1| Length = 917 Score = 38.5 bits (88), Expect = 0.004 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = +2 Query: 92 PELKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHG-ENATFIAKAYYHTMTALR 265 P L +D + FI F KL + P +R FD D T HG ++ +AK Y + + Sbjct: 12 PTLNMDTNARRNFIKFHAKLGEKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIG 71 Query: 266 QL--XXXXXXXXXXXXXRAMFETIARNLLLDRTDHTLELY 379 L + FE R LLL R ++ +E+Y Sbjct: 72 ALLPDDKKETLQFVSMSKGNFELAVRELLLVR-NYRVEVY 110
>GFI1_HUMAN (Q99684) Zinc finger protein Gfi-1 (Growth factor independence 1)| Length = 422 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +1 Query: 19 PALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPG 126 PA P PA LYG +R A GG GA C A G Sbjct: 157 PAPEPGHPAALYGPKR--AAGGAGAGAPGSCSAGAG 190
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123 SP+RSP LPP+ L AG G+ P + + SP Sbjct: 356 SPNRSPCLPPAPEVALPKPVTQAAGSGRCPSPNLQAQESP 395
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2813 Score = 31.6 bits (70), Expect = 0.48 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = +1 Query: 16 SPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQEVAE 156 SPAL S+PA G R +GG P Q++ A+PG LL++V E Sbjct: 194 SPALTRSSPAPGSGYSR--SGGRSTPSTQSQRRAAPGEGGLLKDVLE 238
>RASH_MSVHA (P01115) Transforming protein p29 precursor [Contains: Transforming| protein p21] Length = 241 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 1 ISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLL 141 ++P R+PALP P G +GG +APG A EA + L++ Sbjct: 18 VAPVRAPALPRPAP----GAVAPASGGARAPGLAAPVEAMTEYKLVV 60
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 256 CLKATGR*L*WNLKCQC*QGYV*DHCPQPFVR 351 CL G + +CQC QG+ HC P+VR Sbjct: 198 CLNLPG-----SYRCQCGQGFTGQHCDSPYVR 224
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123 SP+RSP +PP+ L AG GK P + + SP Sbjct: 356 SPNRSPCVPPAPEVALPRPVTQGAGPGKCPSPNLQTQESP 395
>MURG_BRUME (Q8YI66) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 4 SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147 +P RSP L P TPAG + RLL GG + GAQ +A P LL E Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216
>MURG_BRUAB (Q57C78) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 4 SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147 +P RSP L P TPAG + RLL GG + GAQ +A P LL E Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216
>TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Protein| matotopetli) Length = 814 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -2 Query: 299 HLRFHQSYRPVALRQSLCD-SMPLQ*RLHSHHEQCN 195 HLRFHQ +P ++ CD ++ L+ H +C+ Sbjct: 529 HLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCH 564
>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)| (dPKC53E(EY)) (Protein INAC) (Inactivation no after-potential C protein) (Photoreceptor-specific PKC) (Eye-PKC) Length = 700 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 25 LPPSTPAGLYGQRRLLAGGGKAPG 96 LPPS P+ G + AG GK PG Sbjct: 14 LPPSVPSAAPGAKAPAAGAGKGPG 37
>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 930 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAP---------GAQARCEASPGFHLL 138 +P+R P+ G+ G RRL G +AP G +R PG HLL Sbjct: 831 APARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRYSGGPGKHLL 884
>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type| coiled-coil domain protein 1) Length = 970 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEAS 120 +PSR P+LP PA + +++ K P AR EAS Sbjct: 563 APSRPPSLPTPRPASQPRKAPVISSTPKLPALAAREEAS 601
>SKI3_YEAST (P17883) Superkiller 3 protein| Length = 1432 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 104 LDARQAQGFISFFKKLPKDPRAIRLF 181 LD A I +FKK PKDP A+ L+ Sbjct: 297 LDNMDAPLIIKYFKKFPKDPLAMILY 322
>F18B2_HUMAN (Q96ET8) Protein FAM18B2| Length = 276 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +1 Query: 40 PAGLYGQRRLLA--GGGKAPGAQARCEASPGFHL 135 PA L+ RL A GGG++P ++ E P FHL Sbjct: 238 PARLFLSLRLWAWRGGGESPNSRGTGEPGPKFHL 271
>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +1 Query: 10 SRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQEVAE 156 S S STPAG + +G PGA A +PG LLQ++ E Sbjct: 337 STSGGTATSTPAG-----QSTSGPSLVPGAGASMFNTPGMQSLLQQITE 380
>MURG_BRUSU (Q8CY39) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 4 SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147 +P R P L P TPAG + RLL GG + GAQ +A P LL E Sbjct: 166 NPVRPPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216
>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) (Cast) (Cytomatrix protein p110) Length = 957 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/31 (51%), Positives = 17/31 (54%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPG 96 SPSRSP LP S G RR +GGG G Sbjct: 14 SPSRSPRLPRSP---RLGHRRTSSGGGGGTG 41
>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) Length = 957 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/31 (51%), Positives = 17/31 (54%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPG 96 SPSRSP LP S G RR +GGG G Sbjct: 14 SPSRSPRLPRSP---RLGHRRTSSGGGGGTG 41
>ERC2_HUMAN (O15083) ERC protein 2| Length = 957 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/31 (51%), Positives = 17/31 (54%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPG 96 SPSRSP LP S G RR +GGG G Sbjct: 14 SPSRSPRLPRSP---RLGHRRTSSGGGGGTG 41
>DOPR2_DROME (Q24563) Dopamine receptor 2| Length = 539 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = -2 Query: 218 HSHHEQCNNPGDQIDEWPEDPSATS*RRR*NPGLASH 108 HSHH N+ G PE+P N GLA H Sbjct: 359 HSHHHHHNHGGGTTTSTPEEPDDEPLSALHNNGLARH 395
>ILVC_CHRVO (Q7P0H9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 338 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +2 Query: 233 KAYYHTMTALRQLXXXXXXXXXXXXXRAMFETIARNLLLDRT 358 K Y +MTA R+L RAM IA+N L+D++ Sbjct: 295 KTNYPSMTARRRLTAAHPIEKVGAELRAMMPWIAKNKLVDQS 336
>CCPR_KLULA (Q6CW24) Cytochrome c peroxidase, mitochondrial precursor (EC| 1.11.1.5) (CCP) Length = 346 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +2 Query: 41 RRGCMDS-EDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYCTAHGEN 217 R G +D ED PE G+LP+ DA+ + F F + +D + + L H +N Sbjct: 180 RSGRVDQPEDTTPENGRLPDASKDAKYVRCF--FHRLNFEDRQVVALLGAHALGKTHLKN 237 Query: 218 ATF 226 + F Sbjct: 238 SGF 240
>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) Length = 1575 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPG 126 SPS S + P TP GG K+PG+ R + PG Sbjct: 1021 SPSHSSSNRPFTPP-------TSTGGSKSPGSSGRSQTPPG 1054
>SF04_HUMAN (Q8IWZ8) Splicing factor 4 (RNA-binding protein RBP)| Length = 645 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLL 72 +P+ +P+ PPSTP G+R LL Sbjct: 105 APTSAPSAPPSTPTPSAGKRSLL 127 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,633,214 Number of Sequences: 219361 Number of extensions: 974512 Number of successful extensions: 2734 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2723 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
