ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PUR2_WIGBR (Q8D245) Phosphoribosylamine--glycine ligase (EC 6.3.... 30 4.1
2UVRC_SYNY3 (P73580) UvrABC system protein C (Protein uvrC) (Exci... 29 5.4

>PUR2_WIGBR (Q8D245) Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS)|
           (Glycinamide ribonucleotide synthetase)
           (Phosphoribosylglycinamide synthetase)
          Length = 434

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 411 TGLA*VGIVVDYDNPAYVIDYSLRF 337
           TG+  +GI++DY+N   VI+++ RF
Sbjct: 267 TGILYIGIMIDYNNNVNVIEFNCRF 291



to top

>UVRC_SYNY3 (P73580) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 626

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 412 HRPCLSWYCGRL**PSLCNRLLTP 341
           HRPCL++  GR   P +C  L+TP
Sbjct: 175 HRPCLNYDIGRC--PGVCQELITP 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,781,716
Number of Sequences: 219361
Number of extensions: 1256617
Number of successful extensions: 2457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2457
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top