ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full insert sequence Length = 3262 Score = 391 bits (197), Expect = e-105 Identities = 254/273 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 158 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 217 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaaggcggcggcgtgta 245 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 218 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaaggcggcggcgtgta 277 Query: 246 tggaggtcggcgtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcc 305 ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 278 tggaggttggcgtgggctcgttcagcgacccggaggggctcgagggcctcgcccacttcc 337 Query: 306 tcgagcatatgctgttttatgccagtgagaaataccctggagaacaagattatacaaaat 365 ||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || | Sbjct: 338 tcgagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagt 397 Query: 366 atatctctgagcatggtggttcttccaatgcct 398 ||||| | ||||||||||| |||| |||||||| Sbjct: 398 atatcacagagcatggtggctcttgcaatgcct 430
>ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2841 Score = 234 bits (118), Expect = 2e-58 Identities = 154/166 (92%) Strand = Plus / Plus Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 202 gcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagggc 261 Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgagaaataccctggagaacaa 352 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 262 ctcgcccacttcctcgagcatatgctattttatgccagtgagaaataccctggggaacaa 321 Query: 353 gattatacaaaatatatctctgagcatggtggttcttccaatgcct 398 ||||| || || |||||| | ||||||||||| |||| |||||||| Sbjct: 322 gattacacgaagtatatcacagagcatggtggctcttgcaatgcct 367 Score = 159 bits (80), Expect = 9e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 35 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 94 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 95 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 142
>ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2838 Score = 176 bits (89), Expect = 4e-41 Identities = 107/113 (94%) Strand = Plus / Plus Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 190 gcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagggc 249 Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgagaaataccctgg 345 ||||| ||||| ||||| || ||||| |||||||||||||||||||||||||| Sbjct: 250 ctcgcccactttctcgaacacatgctattttatgccagtgagaaataccctgg 302 Score = 157 bits (79), Expect = 3e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 23 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 82 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaag 232 |||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 83 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaag 129
>ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3199 Score = 172 bits (87), Expect = 6e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363 Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328 |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423 Query: 329 agtgagaaata 339 ||||||||||| Sbjct: 424 agtgagaaata 434
>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full insert sequence Length = 3200 Score = 172 bits (87), Expect = 6e-40 Identities = 165/191 (86%) Strand = Plus / Plus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363 Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328 |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423 Query: 329 agtgagaaata 339 ||||||||||| Sbjct: 424 agtgagaaata 434
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 9e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 32978328 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 32978387 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32978388 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 32978435 Score = 159 bits (80), Expect = 9e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 32958783 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 32958842 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 32958843 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 32958890 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 32978568 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 32978627 Query: 291 gcctcgcgcacttcctcg 308 ||||||| ||||| |||| Sbjct: 32978628 gcctcgcccactttctcg 32978645 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 32959022 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 32959081 Query: 291 gcctcgcgcacttcctcg 308 ||||||| |||||||||| Sbjct: 32959082 gcctcgcccacttcctcg 32959099 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 308 gagcatatgctgttttatgccagtgagaaataccctggagaacaagattatacaaaatat 367 ||||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||| Sbjct: 32960652 gagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagtat 32960711 Query: 368 atc 370 ||| Sbjct: 32960712 atc 32960714 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 314 atgctgttttatgccagtgagaaataccctgg 345 ||||| |||||||||||||||||||||||||| Sbjct: 32979329 atgctattttatgccagtgagaaataccctgg 32979360
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 159 bits (80), Expect = 9e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 44556 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 44615 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 44616 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 44663 Score = 159 bits (80), Expect = 9e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 25011 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 25070 Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 25071 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 25118 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 44796 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 44855 Query: 291 gcctcgcgcacttcctcg 308 ||||||| ||||| |||| Sbjct: 44856 gcctcgcccactttctcg 44873 Score = 131 bits (66), Expect = 2e-27 Identities = 75/78 (96%) Strand = Plus / Plus Query: 231 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 25250 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 25309 Query: 291 gcctcgcgcacttcctcg 308 ||||||| |||||||||| Sbjct: 25310 gcctcgcccacttcctcg 25327 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 308 gagcatatgctgttttatgccagtgagaaataccctggagaacaagattatacaaaatat 367 ||||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||| Sbjct: 26880 gagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagtat 26939 Query: 368 atc 370 ||| Sbjct: 26940 atc 26942 Score = 56.0 bits (28), Expect = 9e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 314 atgctgttttatgccagtgagaaataccctgg 345 ||||| |||||||||||||||||||||||||| Sbjct: 45557 atgctattttatgccagtgagaaataccctgg 45588
>ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2997 Score = 143 bits (72), Expect = 5e-31 Identities = 210/256 (82%) Strand = Plus / Plus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 130 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 189 Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 190 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcggtgggctacttc 249 Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328 |||| || ||| ||||| ||||| || || ||||| ||||||||||| || ||||| Sbjct: 250 tgcgatcccgagaggctccctggccttgcacatttccttgagcatatgcttttctatgct 309 Query: 329 agtgagaaataccctggagaacaagattatacaaaatatatctctgagcatggtggttct 388 || ||||||||||||| ||| | ||||| |||| ||||| | |||||||||||||| Sbjct: 310 agcgagaaataccctgtggaagacgattactcaaagtatattgcagagcatggtggttca 369 Query: 389 tccaatgcctttacat 404 |||| ||||| |||| Sbjct: 370 accaacgccttcacat 385
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 22901086 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 22901027 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 22901026 gtcagcgaccccgacaccgacaagg 22901002 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 22937406 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 22937347 Query: 209 atcagcgacgccgacaccgacaagg 233 ||||||||| |||||||||| |||| Sbjct: 22937346 atcagcgaccccgacaccgataagg 22937322 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 22918850 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 22918791 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 22918790 gtcagcgaccccgacaccgacaagg 22918766 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 257 gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306 ||||||| |||| |||| || |||||||||||||| |||||||||||||| Sbjct: 22918623 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 22918574 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 308 gagcatatgctgttttatgccagtgagaaataccctg 344 ||||||||||| || ||||| || ||||||||||||| Sbjct: 22899442 gagcatatgcttttctatgctagcgagaaataccctg 22899406 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 308 gagcatatgctgttttatgccagtgagaaata 339 ||||||||||| || ||||| ||||||||||| Sbjct: 22916634 gagcatatgcttttctatgctagtgagaaata 22916603
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 94353 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 94294 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 94293 gtcagcgaccccgacaccgacaagg 94269 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 112117 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 112058 Query: 209 atcagcgacgccgacaccgacaagg 233 |||||||| ||||||||||||||| Sbjct: 112057 gtcagcgaccccgacaccgacaagg 112033 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 257 gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306 ||||||| |||| |||| || |||||||||||||| |||||||||||||| Sbjct: 111890 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 111841 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 308 gagcatatgctgttttatgccagtgagaaataccctg 344 ||||||||||| || ||||| || ||||||||||||| Sbjct: 92709 gagcatatgcttttctatgctagcgagaaataccctg 92673 Score = 40.1 bits (20), Expect = 5.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 308 gagcatatgctgttttatgccagtgagaaata 339 ||||||||||| || ||||| ||||||||||| Sbjct: 109901 gagcatatgcttttctatgctagtgagaaata 109870
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 12620 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 12561 Query: 209 atcagcgacgccgacaccgacaagg 233 ||||||||| |||||||||| |||| Sbjct: 12560 atcagcgaccccgacaccgataagg 12536
>gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (CCG)X10, closest to marker R2561, genomic sequence Length = 230 Score = 73.8 bits (37), Expect = 4e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 77 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 18 Query: 209 atcagcgacgccgacac 225 |||||||| ||||||| Sbjct: 17 gtcagcgaccccgacac 1
>gb|AY035059.1| Arabidopsis thaliana At3g57470 mRNA sequence Length = 3270 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Plus Query: 302 ttcctcgagcatatgctgttttatgccagtgagaaataccctg 344 ||||| |||||||||||||||||||| ||||| |||||||||| Sbjct: 341 ttccttgagcatatgctgttttatgcaagtgaaaaataccctg 383
>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10 Length = 87503 Score = 58.0 bits (29), Expect = 2e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 308 gagcatatgctgttttatgccagtgagaaataccctg 344 |||||||||||||||||||| ||||| |||||||||| Sbjct: 29242 gagcatatgctgttttatgcaagtgaaaaataccctg 29206
>ref|NM_115607.2| Arabidopsis thaliana metalloendopeptidase AT3G57470 mRNA, complete cds Length = 3179 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 309 agcatatgctgttttatgccagtgagaaataccctg 344 ||||||||||||||||||| ||||| |||||||||| Sbjct: 354 agcatatgctgttttatgcaagtgaaaaataccctg 389
>emb|BX823565.1|CNS0A4WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZC05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3174 Score = 56.0 bits (28), Expect = 9e-05 Identities = 34/36 (94%) Strand = Plus / Plus Query: 309 agcatatgctgttttatgccagtgagaaataccctg 344 ||||||||||||||||||| ||||| |||||||||| Sbjct: 357 agcatatgctgttttatgcaagtgaaaaataccctg 392
>ref|NM_129743.2| Arabidopsis thaliana metalloendopeptidase AT2G41790 mRNA, complete cds Length = 3072 Score = 46.1 bits (23), Expect = 0.089 Identities = 32/35 (91%) Strand = Plus / Plus Query: 302 ttcctcgagcatatgctgttttatgccagtgagaa 336 ||||| ||||||||||| |||||||| |||||||| Sbjct: 208 ttccttgagcatatgctattttatgcaagtgagaa 242
>emb|AJ308542.2|LES308542 Lycopersicon esculentum mRNA for insulin degrading enzyme (ide gene) Length = 3305 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 311 catatgctgttttatgccagtgagaa 336 ||||||||||||||||| |||||||| Sbjct: 257 catatgctgttttatgcaagtgagaa 282
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 cgcacttcctcgagcatatgctgtt 321 ||||||||||||||||| ||||||| Sbjct: 1681886 cgcacttcctcgagcatctgctgtt 1681862
>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence Length = 91071 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 308 gagcatatgctgttttatgccagtgagaa 336 ||||||||||| |||||||| |||||||| Sbjct: 44867 gagcatatgctattttatgcaagtgagaa 44895
>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence Length = 1212674 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ggcctcgcgcacttcctcga 309 |||||||||||||||||||| Sbjct: 1145676 ggcctcgcgcacttcctcga 1145657
>ref|XM_842838.1| Leishmania major strain Friedlin helicase (LMJ_0909) partial mRNA Length = 2862 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ggcctcgcgcacttcctcga 309 |||||||||||||||||||| Sbjct: 2349 ggcctcgcgcacttcctcga 2330
>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence Length = 224996 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 aaaatatatctctgagcatg 380 |||||||||||||||||||| Sbjct: 122921 aaaatatatctctgagcatg 122940
>gb|AC069544.9| Homo sapiens chromosome 10 clone RP11-398C13, complete sequence Length = 214866 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tatacaaaatatatctctga 375 |||||||||||||||||||| Sbjct: 8167 tatacaaaatatatctctga 8148
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 ctcgcgcacttcctcgagca 312 |||||||||||||||||||| Sbjct: 8220558 ctcgcgcacttcctcgagca 8220577
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gagtaccgccgcctgctgct 183 |||||||||||||||||||| Sbjct: 3721129 gagtaccgccgcctgctgct 3721148
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gagtaccgccgcctgctgct 183 |||||||||||||||||||| Sbjct: 1356741 gagtaccgccgcctgctgct 1356760
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 287 gagggcctcgcgcacttcctcgagcatatgctgttt 322 ||||| || ||||||||||| ||||| ||||||||| Sbjct: 5141980 gagggactggcgcacttcctggagcacatgctgttt 5142015 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,634,132 Number of Sequences: 3902068 Number of extensions: 2634132 Number of successful extensions: 56296 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55954 Number of HSP's gapped (non-prelim): 339 length of query: 412 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 390 effective length of database: 17,147,199,772 effective search space: 6687407911080 effective search space used: 6687407911080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
