ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24c02 |
|---|---|
| Clone Library Name | barley_pub |
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 223 bits (569), Expect = 1e-58 Identities = 107/127 (84%), Positives = 118/127 (92%) Frame = +2 Query: 53 MDSEDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYCTAHGENATFIA 232 M+ +DF PEGGKLPE KLDARQAQGFISFFKKLP+DPRA+RLFDRRDY TAHGENATFIA Sbjct: 1 MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA 60 Query: 233 KAYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTK 412 + YYHTM+ALRQLG +SDGI S SVS+AMFETIARN+LL+RTD TLELYEGSGS+WRLTK Sbjct: 61 RTYYHTMSALRQLGSSSDGILSASVSKAMFETIARNILLERTDCTLELYEGSGSNWRLTK 120 Query: 413 SGTPGNI 433 SGTPGNI Sbjct: 121 SGTPGNI 127
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 187 bits (475), Expect = 1e-47 Identities = 88/119 (73%), Positives = 103/119 (86%) Frame = +2 Query: 77 EGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYCTAHGENATFIAKAYYHTMT 256 E KLPELKLDA+QAQGF+SF+K LP D RA+R FDR+DY TAHGEN+ FIAK YYHT T Sbjct: 7 EQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTT 66 Query: 257 ALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTKSGTPGNI 433 ALRQLG S+ +SSVS+SR MFETIAR+LLL+R DHT+ELYEGSGS+WRL K+G+PGNI Sbjct: 67 ALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGSPGNI 125
>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2| Length = 937 Score = 81.3 bits (199), Expect = 1e-15 Identities = 46/118 (38%), Positives = 71/118 (60%), Gaps = 4/118 (3%) Frame = +2 Query: 92 PELKLDARQAQGFISFFKKLPK-DPRAIRLFDRRDYCTAHGENATFIAKAYYHTMTALRQ 268 PELK+D GFI F+K LP+ AIR+FDR D+ TAHG++ATFIA+ Y T + +RQ Sbjct: 5 PELKVD--DEHGFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62 Query: 269 LG-GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGS--SWRLTKSGTPGNI 433 LG + G+ SV+++ +F R L + +E++ +W++ K +PGN+ Sbjct: 63 LGRSDHTGLPSVTMTVTVFRQFLREALF-KLGKRIEIWASPSGRMNWKVVKQASPGNL 119
>MSH2_CERAE (Q5XXB5) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 70.1 bits (170), Expect = 2e-12 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 9/121 (7%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L++ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127 Query: 431 I 433 + Sbjct: 128 L 128
>MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 935 Score = 69.7 bits (169), Expect = 3e-12 Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 9/121 (7%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L+ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 S + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGSKTLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNKAGNKASKENEWYLAFKASPGN 127 Query: 431 I 433 + Sbjct: 128 L 128
>MSH2_HUMAN (P43246) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 69.3 bits (168), Expect = 4e-12 Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 9/121 (7%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L++ GF+ FF+ +P+ P +RLFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKNLQSVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAYKASPGN 127 Query: 431 I 433 + Sbjct: 128 L 128
>MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 934 Score = 66.2 bits (160), Expect = 3e-11 Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 9/121 (7%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+LD+ GF+ FF+ +P+ P +RLFDR D+ TAH E+A A+ + T ++ +G Sbjct: 9 LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + SV +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKTLESVVLSKMNFESFVKDLLLVR-QYRVEVYKNRAGNKASKENDWYLAFKASPGN 127 Query: 431 I 433 + Sbjct: 128 L 128
>MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein homolog 2)| Length = 933 Score = 64.3 bits (155), Expect = 1e-10 Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 9/121 (7%) Frame = +2 Query: 98 LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLG 274 L+L+ GF+ FF+ +P+ P + LFDR D+ TAHGE+A A+ + T ++ +G Sbjct: 9 LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68 Query: 275 -GNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSG-------SSWRLTKSGTPGN 430 + + +V +S+ FE+ ++LLL R + +E+Y+ + W L +PGN Sbjct: 69 PAGAKTLQTVVLSKMNFESFVKDLLLVR-HYRVEVYKNKAGNKASKENDWYLAYKASPGN 127 Query: 431 I 433 + Sbjct: 128 L 128
>MSH2_YEAST (P25847) DNA mismatch repair protein MSH2| Length = 964 Score = 62.4 bits (150), Expect = 5e-10 Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 11/125 (8%) Frame = +2 Query: 92 PELKL-DARQAQGFISFFKKLPKDP-RAIRLFDRRDYCTAHGENATFIAKAYYHTMTALR 265 PELK D + + F + LPK P + IRL D+ DY T G +A F+A + YHT + L+ Sbjct: 6 PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65 Query: 266 QLGGNSDGISS---------VSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTKSG 418 D +++ V+VS + T+ + LLD + +E+Y+ W+L KS Sbjct: 66 NC--QLDPVTAKNFHEPTKYVTVSLQVLATLLKLCLLD-LGYKVEIYD---KGWKLIKSA 119 Query: 419 TPGNI 433 +PGNI Sbjct: 120 SPGNI 124
>MSH2_DROME (P43248) DNA mismatch repair protein spellchecker 1| Length = 917 Score = 61.2 bits (147), Expect = 1e-09 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 4/118 (3%) Frame = +2 Query: 92 PELKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYCTAHG-ENATFIAKAYYHTMTALR 265 P L +D + FI F KL + P +R FD D T HG ++ +AK Y + + Sbjct: 12 PTLNMDTNARRNFIKFHAKLGEKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIG 71 Query: 266 QL--GGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTKSGTPGNI 433 L + + VS+S+ FE R LLL R ++ +E+Y + S W + G+PGN+ Sbjct: 72 ALLPDDKKETLQFVSMSKGNFELAVRELLLVR-NYRVEVYVKNSSDWEIEYRGSPGNL 128
>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2| Length = 982 Score = 56.6 bits (135), Expect = 3e-08 Identities = 31/102 (30%), Positives = 60/102 (58%), Gaps = 2/102 (1%) Frame = +2 Query: 134 SFFKKLPKDPRAIRLFDRRDYCTAHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSR 313 +F++K+PKD +R+FDR ++ A GE+A+F+A+ YHT + L+ N S ++S Sbjct: 20 NFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKH--HNVSNTSYCNLSP 77 Query: 314 AMFETIARNLLLDRTDHTLELY--EGSGSSWRLTKSGTPGNI 433 ++F A ++L + +E++ + + + L K +PGN+ Sbjct: 78 SLFIKFAEDVLSNLAKR-VEIWGANSAKTGFELLKQASPGNM 118
>GFI1_HUMAN (Q99684) Zinc finger protein Gfi-1 (Growth factor independence 1)| Length = 422 Score = 32.7 bits (73), Expect = 0.39 Identities = 17/36 (47%), Positives = 18/36 (50%) Frame = +1 Query: 19 PALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPG 126 PA P PA LYG +R A GG GA C A G Sbjct: 157 PAPEPGHPAALYGPKR--AAGGAGAGAPGSCSAGAG 190
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 32.3 bits (72), Expect = 0.51 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123 SP+RSP LPP+ L AG G+ P + + SP Sbjct: 356 SPNRSPCLPPAPEVALPKPVTQAAGSGRCPSPNLQAQESP 395
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2813 Score = 31.6 bits (70), Expect = 0.87 Identities = 20/47 (42%), Positives = 27/47 (57%) Frame = +1 Query: 16 SPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQEVAE 156 SPAL S+PA G R +GG P Q++ A+PG LL++V E Sbjct: 194 SPALTRSSPAPGSGYSR--SGGRSTPSTQSQRRAAPGEGGLLKDVLE 238
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 256 CLKATGR*L*WNLKCQC*QGYV*DHCPQPFVR 351 CL G + +CQC QG+ HC P+VR Sbjct: 198 CLNLPG-----SYRCQCGQGFTGQHCDSPYVR 224
>RASH_MSVHA (P01115) Transforming protein p29 precursor [Contains: Transforming| protein p21] Length = 241 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 1 ISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLL 141 ++P R+PALP P G +GG +APG A EA + L++ Sbjct: 18 VAPVRAPALPRPAP----GAVAPASGGARAPGLAAPVEAMTEYKLVV 60
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123 SP+RSP +PP+ L AG GK P + + SP Sbjct: 356 SPNRSPCVPPAPEVALPRPVTQGAGPGKCPSPNLQTQESP 395
>MURG_BRUME (Q8YI66) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 29.6 bits (65), Expect = 3.3 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 4 SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147 +P RSP L P TPAG + RLL GG + GAQ +A P LL E Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216
>MURG_BRUAB (Q57C78) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 379 Score = 29.6 bits (65), Expect = 3.3 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%) Frame = +1 Query: 4 SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147 +P RSP L P TPAG + RLL GG + GAQ +A P LL E Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216
>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)| (dPKC53E(EY)) (Protein INAC) (Inactivation no after-potential C protein) (Photoreceptor-specific PKC) (Eye-PKC) Length = 700 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +1 Query: 25 LPPSTPAGLYGQRRLLAGGGKAPG 96 LPPS P+ G + AG GK PG Sbjct: 14 LPPSVPSAAPGAKAPAAGAGKGPG 37
>TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Protein| matotopetli) Length = 814 Score = 28.5 bits (62), Expect = 7.4 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = -2 Query: 299 HLRFHQSYRPVALRQSLCD-SMPLQ*RLHSHHEQCN 195 HLRFHQ +P ++ CD ++ L+ H +C+ Sbjct: 529 HLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCH 564
>SKI3_YEAST (P17883) Superkiller 3 protein| Length = 1432 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 104 LDARQAQGFISFFKKLPKDPRAIRLF 181 LD A I +FKK PKDP A+ L+ Sbjct: 297 LDNMDAPLIIKYFKKFPKDPLAMILY 322
>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)| Length = 930 Score = 28.1 bits (61), Expect = 9.7 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAP---------GAQARCEASPGFHLL 138 +P+R P+ G+ G RRL G +AP G +R PG HLL Sbjct: 831 APARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRYSGGPGKHLL 884
>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type| coiled-coil domain protein 1) Length = 970 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 4 SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEAS 120 +PSR P+LP PA + +++ K P AR EAS Sbjct: 563 APSRPPSLPTPRPASQPRKAPVISSTPKLPALAAREEAS 601 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,981,250 Number of Sequences: 219361 Number of extensions: 1233589 Number of successful extensions: 3611 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3448 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3593 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
