ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl24b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CXA3_RAT (P29414) Gap junction alpha-3 protein (Connexin-46) (Cx46) 29 2.5
2CXA3_MOUSE (Q64448) Gap junction alpha-3 protein (Connexin-46) (... 29 2.5
3RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR pro... 28 4.3
4ZDH23_RAT (Q76IC6) Probable palmitoyltransferase ZDHHC23 (EC 2.3... 28 5.6
5NPT2B_HUMAN (O95436) Sodium-dependent phosphate transport protei... 28 7.3
6NPT2B_PONPY (Q5REV9) Sodium-dependent phosphate transport protei... 28 7.3
7GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 ... 27 9.6

>CXA3_RAT (P29414) Gap junction alpha-3 protein (Connexin-46) (Cx46)|
          Length = 415

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -3

Query: 344 LRRQRNQAHGRGRQGSRPGSAQAPELPALAIRRTGGVRLAG 222
           L R+ N  HGRGR+  R GS + P L        G VR+AG
Sbjct: 112 LLRRDNPQHGRGREPMRTGSPRDPPLR----DDRGKVRIAG 148



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>CXA3_MOUSE (Q64448) Gap junction alpha-3 protein (Connexin-46) (Cx46)|
          Length = 416

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -3

Query: 344 LRRQRNQAHGRGRQGSRPGSAQAPELPALAIRRTGGVRLAG 222
           L R+ N  HGRGR+  R GS + P L        G VR+AG
Sbjct: 112 LLRRDNPQHGRGREPMRTGSPRDPPLR----DDRGKVRIAG 148



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>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 206 RAGTLSRQDAHHLFDELLGQATPVPERYLDGFLAALARAPDSSA 337
           RAG    +DA H+FDELL +        L+  LA +AR   ++A
Sbjct: 25  RAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARDSPAAA 68



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>ZDH23_RAT (Q76IC6) Probable palmitoyltransferase ZDHHC23 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 23) (DHHC-23)
           (NNOS-interacting DHHC domain-containing protein with
           dendritic mRNA)
          Length = 429

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 282 SGTGVACPSNSSNRWCASCRLRVPAR 205
           S  G+  P+ S   WCA C++  PAR
Sbjct: 240 SRVGLDSPAKSKEDWCAKCQVVRPAR 265



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>NPT2B_HUMAN (O95436) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 690

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 257 LGQATPVPERYLDGFLAALARAPDSS 334
           LG A P P++YL+G       APD S
Sbjct: 7   LGDAQPNPDKYLEGAAGQQPTAPDKS 32



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>NPT2B_PONPY (Q5REV9) Sodium-dependent phosphate transport protein 2B|
           (Sodium/phosphate cotransporter 2B) (Na(+)/Pi
           cotransporter 2B) (Sodium-phosphate transport protein
           2B) (Na(+)-dependent phosphate cotransporter 2B)
           (NaPi-2b) (Solute carrier family 34
          Length = 689

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 257 LGQATPVPERYLDGFLAALARAPDSS 334
           LG A P P++YL+G       APD S
Sbjct: 7   LGDAQPNPDKYLEGAAGQQPTAPDKS 32



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>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor|
          Length = 839

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 335 QRNQAHGRGRQGSRPGSAQAPELPA 261
           Q+ Q  G+G+QG +PG  Q  + PA
Sbjct: 589 QQGQQLGQGQQGQQPGQGQQGQQPA 613


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,277,056
Number of Sequences: 219361
Number of extensions: 473420
Number of successful extensions: 1761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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