ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24b12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070947.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072C12, full insert sequence Length = 2532 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgcta 259 ||||||| |||||||||||||||||||||| Sbjct: 516 gacgcacgccacctgttcgacgaattgcta 545
>ref|XM_479730.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2667 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 231 acgcacaccacctgttcgacgaattgct 258 |||| ||||||||||||||||||||||| Sbjct: 336 acgctcaccacctgttcgacgaattgct 363
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 231 acgcacaccacctgttcgacgaattgct 258 |||| ||||||||||||||||||||||| Sbjct: 530355 acgctcaccacctgttcgacgaattgct 530382 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 9044063 gacgcactccacgtgttcgacgaattgct 9044091
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 231 acgcacaccacctgttcgacgaattgct 258 |||| ||||||||||||||||||||||| Sbjct: 120315 acgctcaccacctgttcgacgaattgct 120342
>dbj|AK068841.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013167F23, full insert sequence Length = 2667 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 231 acgcacaccacctgttcgacgaattgct 258 |||| ||||||||||||||||||||||| Sbjct: 336 acgctcaccacctgttcgacgaattgct 363
>ref|XM_538682.2| PREDICTED: Canis familiaris similar to kelch-like 9 (LOC481560), mRNA Length = 2951 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Minus Query: 64 cggcctgcgccgccgctcctcca 86 ||||||||||||||||||||||| Sbjct: 880 cggcctgcgccgccgctcctcca 858
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Plus Query: 51 gccgcatcggcctcggcctgcgc 73 ||||||||||||||||||||||| Sbjct: 2055451 gccgcatcggcctcggcctgcgc 2055473
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Minus Query: 236 caccacctgttcgacgaattgct 258 ||||||||||||||||||||||| Sbjct: 17831432 caccacctgttcgacgaattgct 17831410 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 acgcacaccacctgttcgacga 252 |||||||||||||||||||||| Sbjct: 6691053 acgcacaccacctgttcgacga 6691032
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Minus Query: 236 caccacctgttcgacgaattgct 258 ||||||||||||||||||||||| Sbjct: 17757751 caccacctgttcgacgaattgct 17757729 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 acgcacaccacctgttcgacga 252 |||||||||||||||||||||| Sbjct: 6690928 acgcacaccacctgttcgacga 6690907
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 46.1 bits (23), Expect = 0.074 Identities = 23/23 (100%) Strand = Plus / Minus Query: 236 caccacctgttcgacgaattgct 258 ||||||||||||||||||||||| Sbjct: 50630 caccacctgttcgacgaattgct 50608
>gb|AC135421.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012G21, complete sequence Length = 135750 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 231 acgcacaccacctgttcgacgaattg 256 |||| ||||||||||||||||||||| Sbjct: 71922 acgcccaccacctgttcgacgaattg 71897
>gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0099J16, complete sequence Length = 133198 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 231 acgcacaccacctgttcgacga 252 |||||||||||||||||||||| Sbjct: 80362 acgcacaccacctgttcgacga 80383
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 acgcacaccacctgttcgacga 252 |||||||||||||||||||||| Sbjct: 25924604 acgcacaccacctgttcgacga 25924583
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 231 acgcacaccacctgttcgacgaattg 256 |||| ||||||||||||||||||||| Sbjct: 21819513 acgcccaccacctgttcgacgaattg 21819488
>dbj|AK100084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002K05, full insert sequence Length = 2834 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Plus Query: 231 acgcacaccacctgttcgacga 252 |||||||||||||||||||||| Sbjct: 673 acgcacaccacctgttcgacga 694
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 acgcacaccacctgttcgacga 252 |||||||||||||||||||||| Sbjct: 26243302 acgcacaccacctgttcgacga 26243281
>emb|AL713939.6|CNS07YPL Oryza sativa chromosome 12, . BAC OJ1722_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 171861 Score = 44.1 bits (22), Expect = 0.29 Identities = 22/22 (100%) Strand = Plus / Minus Query: 231 acgcacaccacctgttcgacga 252 |||||||||||||||||||||| Sbjct: 109058 acgcacaccacctgttcgacga 109037
>ref|NM_126048.2| Arabidopsis thaliana unknown protein AT5G66500 mRNA, complete cds Length = 1683 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 accacctgttcgacgaattgc 257 ||||||||||||||||||||| Sbjct: 116 accacctgttcgacgaattgc 136
>ref|XM_480982.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1263 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 795 gacgcactccacgtgttcgacgaattgct 767
>ref|NM_197141.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0051D19.2), mRNA Length = 711 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 283 gacgcacgccacgtgttcgacgaattgct 311
>ref|NM_197155.1| Oryza sativa (japonica cultivar-group) putative chloroplast RNA processing protein (OSJNBa0041P03.13), mRNA Length = 1386 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 88 gacgcacgccacgtgttcgacgaattgct 116
>ref|NM_197156.1| Oryza sativa (japonica cultivar-group) putative chloroplast RNA processing protein (OSJNBa0041P03.12), mRNA Length = 2637 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 112 gacgcacgccacgtgttcgacgaattgct 140
>ref|NM_197174.1| Oryza sativa (japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.19), mRNA Length = 3660 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 109 gacgcacgccacgtgttcgacgaattgct 137
>ref|NM_197176.1| Oryza sativa (japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.17), mRNA Length = 2859 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 97 gacgcacgccacgtgttcgacgaattgct 125
>ref|NM_197175.1| Oryza sativa (japonica cultivar-group) putative membrane-associated protein (OSJNBa0017E08.18), mRNA Length = 1884 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 103 gacgcacgccacgtgttcgacgaattgct 131
>ref|XM_880988.1| PREDICTED: Bos taurus similar to Splicing factor, arginine/serine-rich 16 (Suppressor of white-apricot homolog 2), transcript variant 5 (LOC509208), mRNA Length = 2187 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cgccgccgctcctccacctcc 91 ||||||||||||||||||||| Sbjct: 1197 cgccgccgctcctccacctcc 1217
>ref|XM_880966.1| PREDICTED: Bos taurus similar to Splicing factor, arginine/serine-rich 16 (Suppressor of white-apricot homolog 2), transcript variant 4 (LOC509208), mRNA Length = 1991 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cgccgccgctcctccacctcc 91 ||||||||||||||||||||| Sbjct: 1197 cgccgccgctcctccacctcc 1217
>ref|XM_867858.1| PREDICTED: Bos taurus similar to Splicing factor, arginine/serine-rich 16 (Suppressor of white-apricot homolog 2), transcript variant 2 (LOC509208), mRNA Length = 2476 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 cgccgccgctcctccacctcc 91 ||||||||||||||||||||| Sbjct: 1197 cgccgccgctcctccacctcc 1217
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 6689 gacgcacgccacgtgttcgacgaattgct 6717
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 54153 gacgcacgccacgtgttcgacgaattgct 54181
>ref|XM_533420.2| PREDICTED: Canis familiaris similar to mitogen-activated protein kinase kinase kinase 5 (LOC476215), mRNA Length = 4938 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 cctcggcctgcgccgccgctcctcc 85 |||||||| |||||||||||||||| Sbjct: 1060 cctcggccggcgccgccgctcctcc 1036
>emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1340F09, complete sequence Length = 149449 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 gcacaccacctgttcgacgaattgc 257 |||||||| |||||||||||||||| Sbjct: 46682 gcacaccaactgttcgacgaattgc 46706
>emb|BX842607.1|OSJN00296 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1248C03, complete sequence Length = 141099 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 gcacaccacctgttcgacgaattgc 257 |||||||| |||||||||||||||| Sbjct: 141012 gcacaccaactgttcgacgaattgc 141036
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 273412 gccgcatcggcctcggcctgc 273432
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 217642 gccgcatcggcctcggcctgc 217662
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 73483 gccgcatcggcctcggcctgc 73503
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 86770 gacgcacgccacgtgttcgacgaattgct 86742 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 76011 gacgcacgccacgtgttcgacgaattgct 75983 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 70852 gacgcacgccacgtgttcgacgaattgct 70824
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 41367 gacgcacgccacgtgttcgacgaattgct 41395 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 30505 gacgcacgccacgtgttcgacgaattgct 30533
>gb|DQ311053.1| Oryza sativa (indica cultivar-group) cultivar Minghui63 PPR protein (Rf1a) gene, complete cds Length = 5305 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 1537 gacgcacgccacgtgttcgacgaattgct 1565
>gb|DQ311052.1| Oryza sativa (indica cultivar-group) cultivar Fuyu A PPR protein (rf1a) gene, complete cds Length = 2286 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 97 gacgcacgccacgtgttcgacgaattgct 125
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 ccacctgttcgacgaattgct 258 ||||||||||||||||||||| Sbjct: 16698972 ccacctgttcgacgaattgct 16698992 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 gcacaccacctgttcgacgaattgc 257 |||||||| |||||||||||||||| Sbjct: 1703730 gcacaccaactgttcgacgaattgc 1703754
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18551142 gacgcacgccacgtgttcgacgaattgct 18551170 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18435841 gacgcacgccacgtgttcgacgaattgct 18435869 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18430682 gacgcacgccacgtgttcgacgaattgct 18430710 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18419923 gacgcacgccacgtgttcgacgaattgct 18419951 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18320265 gacgcacgccacgtgttcgacgaattgct 18320237 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18309403 gacgcacgccacgtgttcgacgaattgct 18309375 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18206439 gacgcacgccacgtgttcgacgaattgct 18206411 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||||| |||||||||||||||| Sbjct: 1657473 gacgcacgccacctgttcgacgaa 1657450
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 ccacctgttcgacgaattgct 258 ||||||||||||||||||||| Sbjct: 19080192 ccacctgttcgacgaattgct 19080172
>dbj|AB195686.1| Oryza sativa (indica cultivar-group) PPR8-3 gene for PPR protein, complete cds Length = 4507 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 543 gacgcacgccacgtgttcgacgaattgct 571
>dbj|AB195685.1| Oryza sativa (indica cultivar-group) PPR8-2 gene for PPR protein, complete cds Length = 5652 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 2313 gacgcacgccacgtgttcgacgaattgct 2341
>emb|BX832684.1|CNS0A0W3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZE07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1683 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 accacctgttcgacgaattgc 257 ||||||||||||||||||||| Sbjct: 116 accacctgttcgacgaattgc 136
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 ccacctgttcgacgaattgct 258 ||||||||||||||||||||| Sbjct: 45609 ccacctgttcgacgaattgct 45589
>dbj|AB117754.1| Oryza sativa (indica cultivar-group) DNA, indica specific region near the Rf-1 locus Length = 8200 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 6196 gacgcacgccacgtgttcgacgaattgct 6224
>dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03 Length = 157905 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 54373 gacgcactccacgtgttcgacgaattgct 54401
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 145725 gacgcactccacgtgttcgacgaattgct 145753
>dbj|AB112811.1| Oryza sativa (indica cultivar-group) Rf-1C mRNA for PPR protein, complete cds, cultivar: MTC-10R Length = 2858 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 185 gacgcacgccacgtgttcgacgaattgct 213
>dbj|AB112810.1| Oryza sativa (indica cultivar-group) Rf-1B mRNA for PPR protein, complete cds, cultivar: IR24 Length = 2225 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 216 gacgcacgccacgtgttcgacgaattgct 244
>dbj|AB112809.1| Oryza sativa (indica cultivar-group) Rf-1B mRNA for PPR protein, complete cds, cultivar: MTC-10R Length = 2201 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 217 gacgcacgccacgtgttcgacgaattgct 245
>dbj|AB112808.1| Oryza sativa (indica cultivar-group) Rf-1A mRNA for PPR protein, complete cds, cultivar: MTC-10R Length = 2760 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 275 gacgcacgccacgtgttcgacgaattgct 303
>emb|X05109.1|SDDPEPG Streptomyces R61 gene for DD-peptidase precursor (EC 3.4.16.-) Length = 1747 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 cggcctcggcctgcgccgccg 78 ||||||||||||||||||||| Sbjct: 1365 cggcctcggcctgcgccgccg 1385
>dbj|AB179840.1| Oryza sativa (indica cultivar-group) Rf-1A, Rf-1D genes, Rf-1B pseudogene, complete cds Length = 15395 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 15199 gacgcacgccacgtgttcgacgaattgct 15171 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 10909 gacgcacgccacgtgttcgacgaattgct 10881 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 2968 gacgcacgccacgtgttcgacgaattgct 2940
>dbj|AB013389.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1F13 Length = 83511 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 accacctgttcgacgaattgc 257 ||||||||||||||||||||| Sbjct: 38478 accacctgttcgacgaattgc 38458
>dbj|AB110444.1| Oryza sativa (japonica cultivar-group) rf-1gene for fertility restorer, hypothetical proteins, complete cds Length = 45315 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 39691 gacgcacgccacgtgttcgacgaattgct 39719 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 34532 gacgcacgccacgtgttcgacgaattgct 34560 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 23773 gacgcacgccacgtgttcgacgaattgct 23801
>dbj|AB110443.1| Oryza sativa (indica cultivar-group) Rf-1 gene for fertility restorer, PPR794, PPR683, PPR762 genes for hypothetical protein, complete cds Length = 76363 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 44003 gacgcacgccacgtgttcgacgaattgct 44031 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 31733 gacgcacgccacgtgttcgacgaattgct 31761 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 20964 gacgcacgccacgtgttcgacgaattgct 20992
>dbj|AK121263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104P20, full insert sequence Length = 3849 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 ccacctgttcgacgaattgct 258 ||||||||||||||||||||| Sbjct: 310 ccacctgttcgacgaattgct 330
>dbj|AB110016.2| Oryza sativa (indica cultivar-group) mRNA for Rf1, complete cds Length = 2633 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 151 gacgcacgccacgtgttcgacgaattgct 179
>dbj|AB106867.2| Oryza sativa (indica cultivar-group) Rf-1 gene for PPR protein, complete cds Length = 4727 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 1663 gacgcacgccacgtgttcgacgaattgct 1691
>dbj|AK109903.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F11, full insert sequence Length = 1553 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 347 gacgcactccacgtgttcgacgaattgct 375
>dbj|AK108719.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-B12, full insert sequence Length = 1263 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 795 gacgcactccacgtgttcgacgaattgct 767
>dbj|AK107042.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C05, full insert sequence Length = 2067 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 189 gacgcacgccacgtgttcgacgaattgct 217
>dbj|AK102771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107G16, full insert sequence Length = 2662 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 202 gacgcacgccacgtgttcgacgaattgct 230
>dbj|AK101909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F06, full insert sequence Length = 3070 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 643 gacgcacgccacgtgttcgacgaattgct 671
>dbj|AK101819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067E15, full insert sequence Length = 1653 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 345 gacgcacgccacgtgttcgacgaattgct 373
>dbj|AK100638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110F04, full insert sequence Length = 3289 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 240 gacgcacgccacgtgttcgacgaattgct 268
>dbj|AK099535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031N15, full insert sequence Length = 1080 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 363 gacgcacgccacgtgttcgacgaattgct 391
>dbj|AK064770.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A16, full insert sequence Length = 4748 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 216 gacgcacgccacgtgttcgacgaattgct 244
>dbj|AK063145.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H01, full insert sequence Length = 812 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 211 gacgcacgccacgtgttcgacgaattgct 239
>dbj|AK063387.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-G10, full insert sequence Length = 2477 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 238 ccacctgttcgacgaattgct 258 ||||||||||||||||||||| Sbjct: 344 ccacctgttcgacgaattgct 364
>dbj|AK059574.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A06, full insert sequence Length = 1584 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 288 gacgcacgccacgtgttcgacgaattgct 316
>gb|AY328397.1| Bradyrhizobium sp. Pp2-4 DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AY328399.1| Bradyrhizobium sp. Ppar1-21 DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AY328398.1| Bradyrhizobium sp. jwc91.2 DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AY328395.1| Bradyrhizobium sp. Dr3b-11 DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AY328394.1| Bradyrhizobium sp. Cj3.3 DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AY328393.1| Bradyrhizobium elkanii strain USDA 94 DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AY328392.1| Bradyrhizobium elkanii strain USDA 76 DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AY328391.1| Bradyrhizobium sp. 5111P DnaK (dnaK) gene, partial cds Length = 603 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgc 71 ||||||||||||||||||||| Sbjct: 570 gccgcatcggcctcggcctgc 550
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18561195 gacgcacgccacgtgttcgacgaattgct 18561223 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18445894 gacgcacgccacgtgttcgacgaattgct 18445922 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18440735 gacgcacgccacgtgttcgacgaattgct 18440763 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18429976 gacgcacgccacgtgttcgacgaattgct 18430004 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18329918 gacgcacgccacgtgttcgacgaattgct 18329890 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18319056 gacgcacgccacgtgttcgacgaattgct 18319028 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaattgct 258 ||||||| |||| |||||||||||||||| Sbjct: 18215692 gacgcacgccacgtgttcgacgaattgct 18215664 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||||| |||||||||||||||| Sbjct: 1657424 gacgcacgccacctgttcgacgaa 1657401
>ref|NM_194690.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0020E23.7), mRNA Length = 462 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||||| |||||||||||||||| Sbjct: 446 gacgcacgccacctgttcgacgaa 423
>ref|XM_464868.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2133 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||| |||||||||||||||||| Sbjct: 1101 gacgcccaccacctgttcgacgaa 1124
>ref|NM_184831.1| Oryza sativa (japonica cultivar-group), mRNA Length = 480 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgccgccgctcctccacctc 90 |||||||||||||||||||| Sbjct: 30 cgccgccgctcctccacctc 11
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 tcggcctcggcctgcgccgc 76 |||||||||||||||||||| Sbjct: 3526746 tcggcctcggcctgcgccgc 3526765
>gb|AY690425.1| Dunaliella salina trehalose-6-phosphate synthase/phosphatase mRNA, complete cds Length = 3192 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 agcgctacctggacggcttc 301 |||||||||||||||||||| Sbjct: 1001 agcgctacctggacggcttc 1020
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgccgccgctcctccacctc 90 |||||||||||||||||||| Sbjct: 21897523 cgccgccgctcctccacctc 21897504
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||||| |||||||||||||||| Sbjct: 1657473 gacgcacgccacctgttcgacgaa 1657450
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gcgctacctggacggcttcc 302 |||||||||||||||||||| Sbjct: 190911 gcgctacctggacggcttcc 190892
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gcgctacctggacggcttcc 302 |||||||||||||||||||| Sbjct: 104747 gcgctacctggacggcttcc 104728
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gcgctacctggacggcttcc 302 |||||||||||||||||||| Sbjct: 180476 gcgctacctggacggcttcc 180457
>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0020E23, complete sequence Length = 151359 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||||| |||||||||||||||| Sbjct: 54570 gacgcacgccacctgttcgacgaa 54547
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 gcatcggcctcggcctgcgccgcc 77 ||||||||||||||||||| |||| Sbjct: 1808645 gcatcggcctcggcctgcgtcgcc 1808622
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgccgccgctcctccacctc 90 |||||||||||||||||||| Sbjct: 21890552 cgccgccgctcctccacctc 21890533
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||| |||||||||||||||||| Sbjct: 8641603 gacgcccaccacctgttcgacgaa 8641580
>dbj|AB190317.1| Uncultured bacterium bzo23-1, bzo23-2, bzo23-3, bzo23-4, bzo23-5, bzo23-6 genes for MarR family transcriptional regulator, putative dissimilatory sulfite reductase gamma subunit, MarR family transcriptional repressor of multidrug resistance pump, putative fusaric acid resistance protein fusA precursor, multidrug resistance protein A, multidrug resistance protein B, complete and partial cds, clone:BZO23 Length = 5619 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctg 70 |||||||||||||||||||| Sbjct: 4490 gccgcatcggcctcggcctg 4471
>gb|AC139676.3| Homo sapiens chromosome 8, clone RP13-648O9, complete sequence Length = 166153 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cgccgctcctccacctcccc 93 |||||||||||||||||||| Sbjct: 54015 cgccgctcctccacctcccc 54034 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cgccgctcctccacctcccc 93 |||||||||||||||||||| Sbjct: 53992 cgccgctcctccacctcccc 54011 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cgccgctcctccacctcccc 93 |||||||||||||||||||| Sbjct: 53969 cgccgctcctccacctcccc 53988 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cgccgctcctccacctcccc 93 |||||||||||||||||||| Sbjct: 53946 cgccgctcctccacctcccc 53965
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgcgcc 74 ||||| |||||||||||||||||| Sbjct: 2125924 gccgcgtcggcctcggcctgcgcc 2125901
>gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genomic sequence, complete sequence Length = 127210 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgccgccgctcctccacctc 90 |||||||||||||||||||| Sbjct: 111493 cgccgccgctcctccacctc 111512
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 gccgcctttgccgctgccac 195 |||||||||||||||||||| Sbjct: 5012548 gccgcctttgccgctgccac 5012529 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 gccgcatcggcctcggcctgcgcc 74 ||||| |||||||||||||||||| Sbjct: 3839685 gccgcctcggcctcggcctgcgcc 3839662 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cggcctcggcctgcgccgcc 77 |||||||||||||||||||| Sbjct: 3547950 cggcctcggcctgcgccgcc 3547931
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence Length = 152439 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgccgccgctcctccacctc 90 |||||||||||||||||||| Sbjct: 90244 cgccgccgctcctccacctc 90263
>dbj|AP005510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0009N02 Length = 121142 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||| |||||||||||||||||| Sbjct: 110926 gacgcccaccacctgttcgacgaa 110903
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tgccgcatcggcctcggcctgcgc 73 |||||||||||| ||||||||||| Sbjct: 6011747 tgccgcatcggcgtcggcctgcgc 6011724
>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463G12 Length = 145403 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 230 gacgcacaccacctgttcgacgaa 253 ||||| |||||||||||||||||| Sbjct: 48650 gacgcccaccacctgttcgacgaa 48627
>gb|AE005120.1| Halobacterium sp. NRC-1 section 151 of 170 of the complete genome Length = 10179 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcctcggcctgcgccgccgc 79 |||||||||||||||||||| Sbjct: 751 gcctcggcctgcgccgccgc 732 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,750,891 Number of Sequences: 3902068 Number of extensions: 1750891 Number of successful extensions: 40902 Number of sequences better than 10.0: 107 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39494 Number of HSP's gapped (non-prelim): 1408 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
