ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl24b08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL627184.18| Mouse DNA sequence from clone RP23-125F21 on chromosome 4, complete sequence Length = 152069 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Plus Query: 184 ggagggaggggggcggcggaggaggag 210 ||||||||| ||||||||||||||||| Sbjct: 51007 ggagggaggagggcggcggaggaggag 51033
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 ccgcccgccgccagccgccagc 91 |||||||||||||||||||||| Sbjct: 943204 ccgcccgccgccagccgccagc 943225
>gb|AC148662.1| Macaca mulatta Major Histocompatibility Complex BAC MMU009PO6, complete sequence Length = 191271 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 ccgcccgccgccagccgccagc 91 |||||||||||||||||||||| Sbjct: 45185 ccgcccgccgccagccgccagc 45206
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 tcgccgaccgccgccccgatctggt 124 ||||||||||||||||||| ||||| Sbjct: 1946971 tcgccgaccgccgccccgacctggt 1946995
>gb|AC004890.2| Homo sapiens PAC clone RP4-800G7 from 7, complete sequence Length = 164028 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 181 ggtggagggaggggggcggcggagg 205 ||||| ||||||||||||||||||| Sbjct: 28323 ggtggggggaggggggcggcggagg 28347
>gb|AC099669.2| Homo sapiens chromosome 3 clone RP11-944L7, complete sequence Length = 217035 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 ccgcccgccgccagccgccagcggc 94 |||||||||||| |||||||||||| Sbjct: 67444 ccgcccgccgcccgccgccagcggc 67420
>gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, complete sequence Length = 170763 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 gggaggggggcggcggaggag 207 ||||||||||||||||||||| Sbjct: 143307 gggaggggggcggcggaggag 143287
>gb|AC007668.7| Drosophila melanogaster, chromosome 3R, region 87C-87C, BAC clone BACR02G11, complete sequence Length = 167239 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gatccgcccgccgccagccgc 87 ||||||||||||||||||||| Sbjct: 87826 gatccgcccgccgccagccgc 87846
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cccctccgatccgcccgccgc 80 ||||||||||||||||||||| Sbjct: 23553584 cccctccgatccgcccgccgc 23553564
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cccctccgatccgcccgccgc 80 ||||||||||||||||||||| Sbjct: 16283 cccctccgatccgcccgccgc 16263
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cccctccgatccgcccgccgc 80 ||||||||||||||||||||| Sbjct: 116889 cccctccgatccgcccgccgc 116869
>gb|AE003696.3| Drosophila melanogaster chromosome 3R, section 34 of 118 of the complete sequence Length = 265467 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gatccgcccgccgccagccgc 87 ||||||||||||||||||||| Sbjct: 123426 gatccgcccgccgccagccgc 123446
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 cgccagccgccagcggcagat 98 ||||||||||||||||||||| Sbjct: 1007105 cgccagccgccagcggcagat 1007125
>ref|XM_493945.1| Oryza sativa (japonica cultivar-group), Ozsa8010 predicted mRNA Length = 3072 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgcccgccgccagccgccag 90 |||||||||||||||||||| Sbjct: 1271 cgcccgccgccagccgccag 1290
>ref|XM_482688.1| Oryza sativa (japonica cultivar-group), mRNA Length = 468 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tctcgccgaccgccgccccg 117 |||||||||||||||||||| Sbjct: 370 tctcgccgaccgccgccccg 351
>ref|NM_196265.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.16), mRNA Length = 711 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 gggaggggggcggcggaggaggag 210 |||||||| ||||||||||||||| Sbjct: 588 gggaggggtgcggcggaggaggag 611
>gb|AF075651.1| Equus caballus microsatellite LEX049 Length = 655 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 ggagggaggggggcggcggaggaggaga 211 ||||||||||||| || ||||||||||| Sbjct: 98 ggagggaggggggaggaggaggaggaga 125
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 gggaggggggcggcggaggaggag 210 |||||||| ||||||||||||||| Sbjct: 94963 gggaggggtgcggcggaggaggag 94986
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccgcccgccgccagccgcca 89 |||||||||||||||||||| Sbjct: 31755 ccgcccgccgccagccgcca 31736
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccgcccgccgccagccgcca 89 |||||||||||||||||||| Sbjct: 117929 ccgcccgccgccagccgcca 117910
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccgccagccgccagcggcag 96 |||||||||||||||||||| Sbjct: 974601 ccgccagccgccagcggcag 974582
>gb|AC005099.2| Homo sapiens BAC clone CTA-351J1 from 7, complete sequence Length = 131611 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 gggaggggggcggcggaggaggag 210 |||||| ||||||||||||||||| Sbjct: 115360 gggaggagggcggcggaggaggag 115383
>ref|XM_504976.1| Yarrowia lipolytica CLIB122, YALI0F04059g predicted mRNA Length = 1386 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 aggggggcggcggaggagga 209 |||||||||||||||||||| Sbjct: 323 aggggggcggcggaggagga 342
>emb|AL121979.13|HSJ521A22 Human DNA sequence from clone RP3-521A22 on chromosome 6, complete sequence Length = 21393 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ggggcggcggaggaggagat 212 |||||||||||||||||||| Sbjct: 9298 ggggcggcggaggaggagat 9317
>tpg|BK000747.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M166, complete sequence Length = 1122 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 65 ccgatccgcccgccgccagccgccagcg 92 |||| |||||||||||| |||||||||| Sbjct: 613 ccgagccgcccgccgcccgccgccagcg 586
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 65 ccgatccgcccgccgccagccgccagcg 92 |||| |||||||||||| |||||||||| Sbjct: 70256 ccgagccgcccgccgcccgccgccagcg 70229
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 55 ccacccccctccgatccgcccgccgcca 82 ||||| |||| ||||||||||||||||| Sbjct: 3384268 ccacctcccttcgatccgcccgccgcca 3384241
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 65 ccgatccgcccgccgccagccgccagcg 92 |||| |||||||||||| |||||||||| Sbjct: 6473974 ccgagccgcccgccgcccgccgccagcg 6474001 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccgcccgccgccagccgcca 89 |||||||||||||||||||| Sbjct: 1900099 ccgcccgccgccagccgcca 1900080
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 gggaggggggcggcggaggaggag 210 |||||||| ||||||||||||||| Sbjct: 12295807 gggaggggtgcggcggaggaggag 12295830
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tctcgccgaccgccgccccg 117 |||||||||||||||||||| Sbjct: 21909892 tctcgccgaccgccgccccg 21909873
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgcccgccgccagccgccag 90 |||||||||||||||||||| Sbjct: 3558443 cgcccgccgccagccgccag 3558462
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 ctcgccgaccgccgccccgatctg 122 |||||||||||||||| ||||||| Sbjct: 2045101 ctcgccgaccgccgcctcgatctg 2045124
>gb|AE004513.1| Pseudomonas aeruginosa PAO1, section 74 of 529 of the complete genome Length = 15470 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 ccagccgccagcggcagatc 99 |||||||||||||||||||| Sbjct: 2398 ccagccgccagcggcagatc 2379
>dbj|AP002071.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0675A05 Length = 131972 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgcccgccgccagccgccag 90 |||||||||||||||||||| Sbjct: 50280 cgcccgccgccagccgccag 50299
>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0409A07 Length = 146663 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 tctcgccgaccgccgccccg 117 |||||||||||||||||||| Sbjct: 110561 tctcgccgaccgccgccccg 110542
>dbj|AK109875.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B12, full insert sequence Length = 1765 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cgcccgccgccagccgccag 90 |||||||||||||||||||| Sbjct: 1294 cgcccgccgccagccgccag 1313
>emb|AJ330070.1|HSA330070 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WF12R Length = 686 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 184 ggagggaggggggcggcggaggaggaga 211 ||||||||||| ||||||| |||||||| Sbjct: 286 ggagggaggggcgcggcgggggaggaga 259
>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105 Length = 340000 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ggtggagggaggggggcggc 200 |||||||||||||||||||| Sbjct: 44585 ggtggagggaggggggcggc 44566
>gb|AC147314.4| Pan troglodytes BAC clone RP43-50A6 from chromosome 7, complete sequence Length = 176459 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 gggaggggggcggcggaggaggag 210 |||||| ||||||||||||||||| Sbjct: 147256 gggaggagggcggcggaggaggag 147279
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 gggaggggggcggcggaggaggag 210 |||||||| ||||||||||||||| Sbjct: 12303147 gggaggggtgcggcggaggaggag 12303170
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 65 ccgatccgcccgccgccagccgccagcg 92 |||| |||||||||||| |||||||||| Sbjct: 6540441 ccgagccgcccgccgcccgccgccagcg 6540468 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ccgcccgccgccagccgcca 89 |||||||||||||||||||| Sbjct: 1897820 ccgcccgccgccagccgcca 1897801
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 aggggggcggcggaggagga 209 |||||||||||||||||||| Sbjct: 607279 aggggggcggcggaggagga 607260
>dbj|AP001622.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1430A10, MX1-D21S171 region, complete sequence Length = 149850 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ggtggagggaggggggcggc 200 |||||||||||||||||||| Sbjct: 69854 ggtggagggaggggggcggc 69835 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,917,529 Number of Sequences: 3902068 Number of extensions: 1917529 Number of successful extensions: 55525 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54461 Number of HSP's gapped (non-prelim): 1059 length of query: 246 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 224 effective length of database: 17,147,199,772 effective search space: 3840972748928 effective search space used: 3840972748928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
