>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA|
           cleavage complex II protein Pcf11) (Fragment)
          Length = 1654

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 29/69 (42%), Positives = 41/69 (59%)
 Frame = +3

Query: 234 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 413
           Y+ +L +LTFN KP I  LTI+A ++                 + P  +KLP +YL+DSI
Sbjct: 121 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTA-KAPSSEKLPVMYLMDSI 179

Query: 414 VKNIGREYV 440
           VKN+GREY+
Sbjct: 180 VKNVGREYL 188

>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I|
          Length = 638

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 31/68 (45%), Positives = 35/68 (51%)
 Frame = +3

Query: 234 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 413
           Y  AL +LTFN KPII  LT IA Q                  + P   KLP+LYLLDSI
Sbjct: 8   YLSALEDLTFNSKPIIHTLTYIA-QENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSI 66

Query: 414 VKNIGREY 437
            KN+G  Y
Sbjct: 67  SKNLGAPY 74

>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)|
          Length = 626

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 27/72 (37%), Positives = 37/72 (51%)
 Frame = +3

Query: 222 VVGVYKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYL 401
           +V  +   L ELTFN +PIIT LT +A ++                  +P +QKL + Y 
Sbjct: 8   IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP-KQKLYAFYA 66

Query: 402 LDSIVKNIGREY 437
           LDSI KN+G  Y
Sbjct: 67  LDSICKNVGSPY 78

>YRR2_CAEEL (Q09345) Hypothetical protein R144.2|
          Length = 823

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 23/64 (35%), Positives = 29/64 (45%)
 Frame = +3

Query: 234 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 413
           Y+E LAEL  N K  I  LTI+A                      P  QKL  +Y+ DSI
Sbjct: 11  YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSP-SQKLLVMYVCDSI 69

Query: 414 VKNI 425
           +KN+
Sbjct: 70  LKNV 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,899,070
Number of Sequences: 219361
Number of extensions: 503843
Number of successful extensions: 1413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)