>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 156   gcgacgcacgccacctggcggcgccggc 183
             ||||||| ||||||||||||||||||||
Sbjct: 81976 gcgacgcgcgccacctggcggcgccggc 82003

>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 156   gcgacgcacgccacctggcggcgccggc 183
             ||||||| ||||||||||||||||||||
Sbjct: 18459 gcgacgcgcgccacctggcggcgccggc 18486

>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12
          Length = 349346

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 156   gcgacgcacgccacctggcggcgccggc 183
             ||||||| ||||||||||||||||||||
Sbjct: 82034 gcgacgcgcgccacctggcggcgccggc 82061

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 172    ggcggcgccggcggtgcgcggcgg 195
              ||||||||||||||||||||||||
Sbjct: 663592 ggcggcgccggcggtgcgcggcgg 663569



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     ggcggcgccggcggtgcgcg 191
               ||||||||||||||||||||
Sbjct: 2856875 ggcggcgccggcggtgcgcg 2856856

>gb|AC158763.6| Mus musculus chromosome 18, clone RP23-343L17, complete sequence
          Length = 204022

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 51    actctcccctcctccccaaaac 72
             ||||||||||||||||||||||
Sbjct: 85896 actctcccctcctccccaaaac 85917

>dbj|AK169985.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630006L19
           product:unclassifiable, full insert sequence
          Length = 2620

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 51  actctcccctcctccccaaaac 72
           ||||||||||||||||||||||
Sbjct: 655 actctcccctcctccccaaaac 676

>dbj|AK079263.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
          enriched library, clone:9530065A06
          product:unclassifiable, full insert sequence
          Length = 2816

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 actctcccctcctccccaaaac 72
          ||||||||||||||||||||||
Sbjct: 76 actctcccctcctccccaaaac 97

>dbj|AK053330.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130010B03 product:unclassifiable, full
           insert sequence
          Length = 2570

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 51  actctcccctcctccccaaaac 72
           ||||||||||||||||||||||
Sbjct: 641 actctcccctcctccccaaaac 662

>ref|XM_235710.3| PREDICTED: Rattus norvegicus tensin like C1 domain containing
            phosphatase (predicted) (Tenc1_predicted), mRNA
          Length = 4958

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 372  atagtcaggcactggagcatgg 393
            ||||||||||||||||||||||
Sbjct: 2616 atagtcaggcactggagcatgg 2595

>ref|XM_470350.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1434

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 172 ggcggcgccggcggtgcgcggcggg 196
           |||||||||||||| ||||||||||
Sbjct: 423 ggcggcgccggcggcgcgcggcggg 399

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 172      ggcggcgccggcggtgcgcggcggg 196
                |||||||||||||| ||||||||||
Sbjct: 34895219 ggcggcgccggcggcgcgcggcggg 34895195



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 61      cctccccaaaacctctcgcg 80
               ||||||||||||||||||||
Sbjct: 9959162 cctccccaaaacctctcgcg 9959181

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 172      ggcggcgccggcggtgcgcggcggg 196
                |||||||||||||| ||||||||||
Sbjct: 34985291 ggcggcgccggcggcgcgcggcggg 34985267



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 61      cctccccaaaacctctcgcg 80
               ||||||||||||||||||||
Sbjct: 9957283 cctccccaaaacctctcgcg 9957302

>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
              sequence
          Length = 171376

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 172    ggcggcgccggcggtgcgcggcggg 196
              |||||||||||||| ||||||||||
Sbjct: 120261 ggcggcgccggcggcgcgcggcggg 120285

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     cggcggcgcggggccggctc 239
               ||||||||||||||||||||
Sbjct: 3499997 cggcggcgcggggccggctc 3499978

>gb|AC159817.2| Mus musculus BAC clone RP23-228E8 from chromosome 9, complete sequence
          Length = 193445

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   ctcttgcacatcagagctac 358
             ||||||||||||||||||||
Sbjct: 33416 ctcttgcacatcagagctac 33435

>gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosome 9, complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    ctcttgcacatcagagctac 358
              ||||||||||||||||||||
Sbjct: 167395 ctcttgcacatcagagctac 167414

>gb|AC113104.15| Mus musculus chromosome 18, clone RP23-321L15, complete sequence
          Length = 207418

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   cctgctgccccctgtgtcct 287
             ||||||||||||||||||||
Sbjct: 79557 cctgctgccccctgtgtcct 79576

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 312     tcggtgttaatgaagaggac 331
               ||||||||||||||||||||
Sbjct: 2960579 tcggtgttaatgaagaggac 2960598

>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   ggcggcgcggggccggctcc 240
             ||||||||||||||||||||
Sbjct: 57423 ggcggcgcggggccggctcc 57404

>ref|XM_548464.2| PREDICTED: Canis familiaris similar to Zinc finger protein 482
           (Zinc finger and BTB domain containing protein 6) (Zinc
           finger protein with interaction domain) (LOC491343),
           mRNA
          Length = 1419

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 cggtgtcagcggcggcgcgg 230
           ||||||||||||||||||||
Sbjct: 55  cggtgtcagcggcggcgcgg 36

>gb|AC137075.2| Genomic sequence for Oryza sativa, Nipponbare striain, clone
            OSJNBb0027B12, from chromosome 3, complete sequence
          Length = 127426

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   cctccccaaaacctctcgcg 80
            ||||||||||||||||||||
Sbjct: 9078 cctccccaaaacctctcgcg 9097

>emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on chromosome 9 Contains the 5'
              end of the PAX5 gene for paired box gene 5 (B-cell lineage
              specific activator protein) (BSAP), a ribosomal protein L32
              (RPL32) pseudogene and five CpG islands, complete sequence
          Length = 159096

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     tcccctcctccccaaaacct 74
              ||||||||||||||||||||
Sbjct: 108193 tcccctcctccccaaaacct 108212

>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   ggcgccggcggtgcgcggcg 194
             ||||||||||||||||||||
Sbjct: 88138 ggcgccggcggtgcgcggcg 88157

>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   ggcgccggcggtgcgcggcg 194
             ||||||||||||||||||||
Sbjct: 11181 ggcgccggcggtgcgcggcg 11200

>ref|NM_141691.1| Drosophila melanogaster CG8500-RA (CG8500), mRNA
          Length = 3412

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 ggggccagcgccagcggcgg 263
           ||||||||||||||||||||
Sbjct: 885 ggggccagcgccagcggcgg 904

>gb|AC007431.8| Homo sapiens chromosome 17, clone RP11-118E18, complete sequence
          Length = 166518

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     tccccaatccccgcaagtggagag 30
             |||||| |||||||||||||||||
Sbjct: 70352 tccccactccccgcaagtggagag 70375

>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     aggggccagcgccagcggcg 262
               ||||||||||||||||||||
Sbjct: 1939701 aggggccagcgccagcggcg 1939720

>gb|AC008316.3|AC008316 Drosophila melanogaster, chromosome 3R, region 85F-85F, BAC clone
             BACR23O04, complete sequence
          Length = 160817

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   ggggccagcgccagcggcgg 263
             ||||||||||||||||||||
Sbjct: 61398 ggggccagcgccagcggcgg 61417

>gb|AC008315.9|AC008315 Drosophila melanogaster, chromosome 3R, region 85E-85E, BAC clone
              BACR30F01, complete sequence
          Length = 177028

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    ggggccagcgccagcggcgg 263
              ||||||||||||||||||||
Sbjct: 168551 ggggccagcgccagcggcgg 168570

>gb|BT024201.1| Drosophila melanogaster RE46661 full insert cDNA
          Length = 3408

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 ggggccagcgccagcggcgg 263
           ||||||||||||||||||||
Sbjct: 883 ggggccagcgccagcggcgg 902

>gb|AC137074.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0022M22, from chromosome 3, complete sequence
          Length = 124166

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     cctccccaaaacctctcgcg 80
              ||||||||||||||||||||
Sbjct: 121551 cctccccaaaacctctcgcg 121570

>emb|AJ271460.1|CRE271460 Chlamydomonas reinhardtii mRNA for chloroplast TPR protein (nac2
            gene)
          Length = 5034

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  ggcgccggcggtgcgcggcg 194
            ||||||||||||||||||||
Sbjct: 3923 ggcgccggcggtgcgcggcg 3942

>gb|AE003684.4| Drosophila melanogaster chromosome 3R, section 22 of 118 of the
             complete sequence
          Length = 214323

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   ggggccagcgccagcggcgg 263
             ||||||||||||||||||||
Sbjct: 81121 ggggccagcgccagcggcgg 81140

>gb|AC171274.2| Gallus gallus BAC clone CH261-121C13 from chromosome ul, complete
              sequence
          Length = 218983

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    acatcagagctaccaatcag 365
              ||||||||||||||||||||
Sbjct: 183750 acatcagagctaccaatcag 183731

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     gcggcggctttcctgctgcc 276
               ||||||||||||||||||||
Sbjct: 1685918 gcggcggctttcctgctgcc 1685937

>emb|AL645987.7| Mouse DNA sequence from clone RP23-27B20 on chromosome 11 Contains a
             eukaryotic translation initiation factor 3, subunit 2
             (beta) (Eif3s2) pseudogene, a novel protein (MOR256-1)
             similar to the olfactory receptor family and a novel
             protein (MOR256-28) similar to the olfactory receptor
             family, complete sequence
          Length = 99868

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 380   gcactggagcatggaaatgc 399
             ||||||||||||||||||||
Sbjct: 75965 gcactggagcatggaaatgc 75984

>gb|AY823670.1| Mus musculus 2010007H12Rik (2010007H12Rik), BIPL1 (Bipl1), ZCWPW1
             (Zcwpw1), and PILRA (Pilra) genes, complete cds; PILRP5
             (Pilrp5) pseudogene, complete sequence; PILRB (Pilrb)
             gene, complete cds; PILRP4 (Pilrp4) pseudogene, complete
             sequence; PILRB2 (Pilrb2) gene, complete cds; PILRP3
             (Pilrp3), PILRP2 (Pilrp2), and PILRP1 (Pilrp1)
             pseudogenes, complete sequence; and CYP3A13 (Cyp3a13) and
             GJE1 (Gje1) genes, complete cds
          Length = 194414

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   agcggcggcgcggggccggc 237
             ||||||||||||||||||||
Sbjct: 13015 agcggcggcgcggggccggc 13034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,056,314
Number of Sequences: 3902068
Number of extensions: 3056314
Number of successful extensions: 78241
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77116
Number of HSP's gapped (non-prelim): 1125
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)