Clone Name | bastl24a09 |
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Clone Library Name | barley_pub |
>U202A_ARATH (Q9XIK4) Hypothetical UPF0202 protein At1g10490| Length = 1058 Score = 117 bits (294), Expect = 5e-27 Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 1/90 (1%) Frame = +2 Query: 95 IRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHR 274 IRTLIENGV+ R RSMF+I+GDK+RDQIVNL+++L+KS VKS PSVLWCY+N+L+ISSH Sbjct: 9 IRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKNRLDISSHN 68 Query: 275 KKRAKQIKKLCSAG-YGPREADPFSSSRDL 361 KKRAKQ+KK+ G P + D FS D+ Sbjct: 69 KKRAKQLKKMKERGQLDPEKLDAFSLFLDV 98
>U202B_ARATH (Q9M2Q4) Hypothetical UPF0202 protein At3g57940| Length = 1024 Score = 114 bits (285), Expect = 6e-26 Identities = 55/90 (61%), Positives = 73/90 (81%), Gaps = 1/90 (1%) Frame = +2 Query: 95 IRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHR 274 IRTLIENGV+ R RSMF+I+GDKSRDQIVNL++ML+K+ +K PSVLWCY++KL+ISSH+ Sbjct: 9 IRTLIENGVKLRHRSMFVIIGDKSRDQIVNLHHMLSKAVIKCNPSVLWCYKDKLDISSHK 68 Query: 275 KKRAKQIKKLCSAG-YGPREADPFSSSRDL 361 +KR+KQ+K+L G P + D FS D+ Sbjct: 69 QKRSKQLKRLRERGQLDPEKLDAFSRLLDV 98
>ALP_HUMAN (Q9H0A0) N-acetyltransferase-like protein (EC 2.3.1.-)| Length = 1025 Score = 101 bits (251), Expect = 5e-22 Identities = 47/84 (55%), Positives = 67/84 (79%), Gaps = 1/84 (1%) Frame = +2 Query: 95 IRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHR 274 IR LIENGV +RQRS+F++VGD+ +DQ+V L++ML+K+ VK+RPSVLWCY+ +L SSHR Sbjct: 10 IRILIENGVAERQRSLFVVVGDRGKDQVVILHHMLSKATVKARPSVLWCYKKELGFSSHR 69 Query: 275 KKRAKQI-KKLCSAGYGPREADPF 343 KKR +Q+ KK+ + ++ DPF Sbjct: 70 KKRMRQLQKKIKNGTLNIKQDDPF 93
>YIL8_CAEEL (O01757) Hypothetical UPF0202 protein F55A12.8 in chromosome I| Length = 1043 Score = 90.9 bits (224), Expect = 7e-19 Identities = 45/84 (53%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Frame = +2 Query: 95 IRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHR 274 IRT IENGV RSMF +VGDK+RDQ+ L ++L+KS V +RP+VLWCY+ +L S+HR Sbjct: 9 IRTQIENGVASGHRSMFAVVGDKARDQVPILYHILSKSTVSARPNVLWCYKKELSFSTHR 68 Query: 275 KKRAKQIKKLCSAGYGP-READPF 343 K+AK++KK + G +ADPF Sbjct: 69 AKKAKKMKKATTTISGSLPDADPF 92
>YDK9_SCHPO (P87115) Hypothetical UPF0202 protein C20G8.09c in chromosome I| Length = 1033 Score = 89.0 bits (219), Expect = 3e-18 Identities = 43/85 (50%), Positives = 64/85 (75%), Gaps = 2/85 (2%) Frame = +2 Query: 95 IRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCY-RNKLEISSH 271 I TLI+NG +++QRS F++VGD++RDQ+VNL+++L++S+V +RP+VLW Y ++ L +SH Sbjct: 10 IPTLIKNGCQEKQRSFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYKKDLLGFTSH 69 Query: 272 RKKRAKQIKKLCSAGY-GPREADPF 343 RKKR +IKK G P DPF Sbjct: 70 RKKRENKIKKEIKRGIRDPNSEDPF 94
>U202_DROME (Q9W3C1) Polycomb protein l(1)G0020 (p110 protein)| Length = 1008 Score = 87.0 bits (214), Expect = 1e-17 Identities = 48/88 (54%), Positives = 61/88 (69%), Gaps = 1/88 (1%) Frame = +2 Query: 95 IRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLE-ISSH 271 IR +IENGV+ R+MFI++GDK+RDQ+ L +L KS VK+RP+VLWCY+NK E IS+H Sbjct: 10 IRVMIENGVKLGHRTMFIVIGDKARDQVPILYDILTKSTVKARPTVLWCYKNKDEAISNH 69 Query: 272 RKKRAKQIKKLCSAGYGPREADPFSSSR 355 KKRA KK+ EAD F S R Sbjct: 70 GKKRA---KKIAVGKVDVNEADLFDSFR 94
>YNN2_YEAST (P53914) Hypothetical UPF0202 protein YNL132w| Length = 1056 Score = 80.1 bits (196), Expect = 1e-15 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 2/87 (2%) Frame = +2 Query: 95 IRTLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNK-LEISSH 271 I +LI NGV+ +QRS+F+IVGD++R+Q+ NL+Y++ + +K SVLW Y+ K L +SH Sbjct: 10 IPSLIRNGVQTKQRSIFVIVGDRARNQLPNLHYLMMSADLKMNKSVLWAYKKKLLGFTSH 69 Query: 272 RKKRAKQIKKLCSAGYGP-READPFSS 349 RKKR +IKK G E DPF S Sbjct: 70 RKKRENKIKKEIKRGTREVNEMDPFES 96
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 34.7 bits (78), Expect = 0.058 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQ 309 P P L P +A + L++PQQ + QQ QEE +Q Q+ Q Sbjct: 902 PQAIPTLQLQSAPSTIADPQQLMVPQQQQQQQHQEEQQQQPQQQQQ 947
>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)| Length = 508 Score = 31.2 bits (69), Expect = 0.64 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = -1 Query: 366 MSRSREEEKGSASRGP*PALHSFLICLARFFLWLLISSL 250 +S R E K + + G + +FLIC FFLW ++SSL Sbjct: 339 ISTMRRERKAARTLGI--IMSAFLICWLPFFLWYIVSSL 375
>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 760 Score = 30.8 bits (68), Expect = 0.84 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQRG 315 P +QPQ GQ P+Q+ + PQQ QQPQ+ Q Q Q G Sbjct: 658 PGQQPQQIPGQQPQQIPGQQ----PQQIPGQQPQQIPVQQPQPQPQMG 701
>DPOG1_MOUSE (P54099) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial| DNA polymerase catalytic subunit) (PolG-alpha) Length = 1239 Score = 30.4 bits (67), Expect = 1.1 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Frame = +2 Query: 101 TLIENGVRQRQRSMFIIVGDKSRDQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKK 280 T +N + QR M + D + D +L+ R K P W + + ++ ++K Sbjct: 429 TEAQNTYEELQREMKKSLMDLANDAC----QLLSGERYKEDP---WLWDLEWDLQEFKQK 481 Query: 281 RAKQIKKLCSAGYGPRE-ADPFSSSRD 358 +AK++KK SA P E A PF D Sbjct: 482 KAKKVKKPASASKLPIEGAGPFGDPMD 508
>SYG_AERPE (Q9YBF8) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 583 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +1 Query: 208 PRQVAPLRALVLPQQARDQQPQEEARQADQEAMQRG 315 PR +AP++A+VLP D++ E AR + ++ G Sbjct: 468 PRDIAPVQAVVLPLVENDEKLVERARMVYETLVEAG 503
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +1 Query: 178 RQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQE 300 RQ Q Q P+Q+ + L PQQ + QQP ++ +Q+ ++ Sbjct: 30 RQQQPQQLQQPQQLQQPQQLQQPQQQQQQQPHQQQQQSSRQ 70
>LMBL3_MOUSE (Q8BLB7) Lethal(3)malignant brain tumor-like 3 protein| (L(3)mbt-like 3 protein) Length = 883 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +1 Query: 178 RQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQR 312 +QPQ Q P+Q P++ PQQ + QP ++ Q Q+A +R Sbjct: 733 QQPQ--QAQQPQQAPPVQQ---PQQVQQAQPTQQQAQTQQQAQRR 772 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 184 PQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 297 P + Q P+QV ++ PQQA+ ++A+QA Q Sbjct: 664 PSVQQSQPPQQVQQVQHAQPPQQAQKAPQAQQAQQAQQ 701
>DPOG1_RAT (Q9QYV8) DNA polymerase gamma subunit 1 (EC 2.7.7.7) (Mitochondrial| DNA polymerase catalytic subunit) (PolG-alpha) Length = 1216 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +2 Query: 194 MLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKLCSAGYGPRE-ADPFSSSRD 358 +L+ R K P W + + ++ ++K+AK++KK SA P E A PF D Sbjct: 455 LLSGERYKEDP---WLWDLEWDLQEFKQKKAKKVKKTASASKLPIEGAGPFGDPMD 507
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQ---ADQEAMQ 309 P +QPQ Q P+Q + PQQ QQPQ + Q Q AMQ Sbjct: 124 PQQQPQQQPQQQPQQQPQQQPQQQPQQQPQQQPQLQPLQPQLGTQNAMQ 172 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 178 RQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQ 309 +QP + A Q P+Q + PQQ QQPQ++ +Q Q+ Q Sbjct: 115 QQPDI-AQQQPQQQPQQQPQQQPQQQPQQQPQQQPQQQPQQQPQ 157
>PACC_TRIRU (Q9C1A4) pH-response transcription factor pacC/RIM101| Length = 758 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 244 PQQARDQQPQEEARQADQEAMQR 312 PQQ + QQPQ++ +Q Q+A Q+ Sbjct: 12 PQQQQQQQPQQQGQQQGQQAQQQ 34
>DNJC9_HUMAN (Q8WXX5) DnaJ homolog subfamily C member 9 (DnaJ protein SB73)| Length = 260 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 181 QPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQRGL 318 Q + AG+VP A ++ AR ++ QEEA++A+ + GL Sbjct: 164 QQAIDAGEVPSYNAFVKESKQKMNARKRRAQEEAKEAEMSRKELGL 209
>ZIPA_ECOL6 (Q8FFC0) Cell division protein zipA homolog| Length = 332 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQ 309 P +QP P+ PL+ V PQ A QP A Q Q+A Q Sbjct: 124 PVQQPVQQPAYQPQPEQPLQQPVSPQVASAPQPVHSAPQPAQQAFQ 169
>PAT1_YEAST (P25644) Topoisomerase II-associated protein PAT1| Length = 796 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQRGLWTPRGRP 339 P Q + P+Q+APL+ ++ Q QQ Q + + + AM P+G P Sbjct: 120 PSPQSTMAPAPAPQQMAPLQPILSMQDLERQQRQMQQQFMNFHAMGHPQGLPQGPP 175
>NHL1_CAEEL (Q03601) RING finger protein nhl-1| Length = 974 Score = 28.5 bits (62), Expect = 4.2 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEA------RQADQEAMQRGLWTPRG 333 PD Q Q + +V + +A ++ + D++ ++ A R A +EA G W RG Sbjct: 640 PDIQAQFTSARVQQLLAERQSRLDSSTTTDEEKEKLAVLRQRGRSASREA---GEWRARG 696 Query: 334 RPLLLFSR 357 RP +F R Sbjct: 697 RPRAVFGR 704
>YUBO_CAEEL (Q93591) Hypothetical protein F26A3.7| Length = 297 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 269 HRKKRAKQIKKLCSAGYGPREADPFSSSRDLDI 367 H+KKR +++K AGY E PF +D+++ Sbjct: 237 HQKKRDEKVK---DAGYAQGERRPFDREKDMEV 266
>ANP1_YEAST (P32629) Mannan polymerase II complex ANP1 subunit (M-Pol II| subunit ANP1) (Aminonitrophenyl propanediol resistance protein) Length = 500 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = +1 Query: 247 QQARDQQPQEEARQADQEAMQRGLWTPRGRPL 342 QQ + QQ Q++ +Q Q+ Q+ P+G+PL Sbjct: 446 QQQQQQQQQQQQQQQQQQQQQQLDGNPQGKPL 477
>UVRB_FUSNN (Q8RGR2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 663 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = +2 Query: 170 DQIVNLNYMLAKSRVKSRPSVLWCYRNKLEISSHRKKRAKQIKKL 304 + ++NL+Y + + + ++ V +RNK +I K K+IKKL Sbjct: 596 EDLINLDYGIEEKKFENDKKV---FRNKTDIEKEITKLEKKIKKL 637
>AMBN_MOUSE (O55189) Ameloblastin precursor| Length = 407 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQP 270 P QP +H GQ+P Q L A PQ A + P Sbjct: 132 PGPQPPMHPGQLPLQEGELIAPDEPQVAPSENP 164
>DRG2_PHYBI (Q90ZK5) Dermaseptin DRG2 precursor (Dermaseptin-2)| Length = 77 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +1 Query: 238 VLPQQARDQQPQEEARQADQEAMQRGLWT 324 + ++ R+ + +EE +Q M+RGLW+ Sbjct: 21 ICEEEKRENEDEEEQEDDEQSEMKRGLWS 49
>DRG1_PHYBI (Q90ZK3) Dermaseptin DRG1 precursor (Dermaseptin-1)| Length = 81 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +1 Query: 238 VLPQQARDQQPQEEARQADQEAMQRGLWT 324 + ++ R+ + +EE +Q M+RGLW+ Sbjct: 21 ICEEEKRENEDEEEQEDDEQSEMKRGLWS 49
>DMS2_PHYBI (P31107) Adenoregulin precursor (Dermaseptin BII) (Dermaseptin B2)| Length = 81 Score = 27.7 bits (60), Expect = 7.1 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +1 Query: 238 VLPQQARDQQPQEEARQADQEAMQRGLWT 324 + ++ R+ + +EE +Q M+RGLW+ Sbjct: 21 ICEEEKRENEDEEEQEDDEQSEMKRGLWS 49
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQRGL 318 P + + Q P A + QQ + QQ Q++ +Q Q+ Q+GL Sbjct: 3750 PQQSQPPSSRQTPSGTASRQPQTQQQQQQQQQQQQQQQQQQQQQQQQGL 3798
>DPOLA_OXYNO (Q94636) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1492 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/31 (32%), Positives = 20/31 (64%) Frame = +2 Query: 272 RKKRAKQIKKLCSAGYGPREADPFSSSRDLD 364 R+++++Q+K+ + G + +PFS R LD Sbjct: 173 RRRQSEQLKQQANIGQNQSDVNPFSKKRKLD 203
>RIBAB_CHLPN (Q9Z734) Riboflavin biosynthesis protein ribAB [Includes: GTP| cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] Length = 418 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = -1 Query: 156 PTMMNMDRCRCRTPFSISV 100 P M+ +RCR +TPF++SV Sbjct: 81 PPMVKDNRCRFKTPFTVSV 99
>HOR8_HORVU (P17991) C-hordein (Clone PC HOR1-3) (Fragment)| Length = 72 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = +1 Query: 181 QPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQR 312 QPQ Q P+Q PL+ PQQ QQPQ+ Q Q Q+ Sbjct: 3 QPQEPFPQQPQQPFPLQ----PQQPFPQQPQQPFPQPQQPFRQQ 42
>KAPC_DICDI (P34099) cAMP-dependent protein kinase catalytic subunit (EC| 2.7.11.11) Length = 648 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/46 (39%), Positives = 26/46 (56%) Frame = +1 Query: 172 PDRQPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQEAMQ 309 P +QPQ Q P+Q P + PQQ + QQPQ++ +Q Q+ Q Sbjct: 139 PQQQPQQ---QQPQQQQPQQQQ--PQQQQQQQPQQQ-QQPQQQLQQ 178
>GDB2_WHEAT (P08453) Gamma-gliadin precursor| Length = 327 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 181 QPQLHAGQVPRQVAPLRALVLPQQARDQQPQEEARQADQ 297 QPQ QVP+ P + + PQQ QQPQ+ Q Q Sbjct: 62 QPQQ---QVPQPQQPQQPFLQPQQPFPQQPQQPFPQTQQ 97 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,827,967 Number of Sequences: 219361 Number of extensions: 533389 Number of successful extensions: 2129 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2104 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)