ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl24a07 |
|---|---|
| Clone Library Name | barley_pub |
>ATPO_IPOBA (P22778) ATP synthase delta chain, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 244 Score = 68.9 bits (167), Expect = 5e-12 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Frame = +3 Query: 114 MAARHLRSGLPLLQARLAATESAAV-----------AQVSRGLATQVDKPAENKIKVPKA 260 M R G +LQ L++ + + +++ R AT E KIKVP Sbjct: 3 MTGRARSMGFSILQKALSSAQRSNAHRSILCPTLSNSELLRNYAT-ASASKEQKIKVPLT 61 Query: 261 LYGGTGNYXXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQFIKDSSVPKATRV 431 +YG +GNY EKVESE+ D+V A KKSP FSQF++D SVP TRV Sbjct: 62 MYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRV 118
>ATPO_ARATH (Q96251) ATP synthase delta chain, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 238 Score = 57.8 bits (138), Expect = 1e-08 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 5/109 (4%) Frame = +3 Query: 120 ARHLRSGLPLLQARLAATESAAVAQVSR---GLATQVDKPAEN--KIKVPKALYGGTGNY 284 A RSG+ + +A T+S + + L T A+ +KVP AL G GN+ Sbjct: 2 ANRFRSGISFFKT-IAVTDSVSSVRSKSLFPALRTYATASAQTTANVKVPIALVGENGNF 60 Query: 285 XXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQFIKDSSVPKATRV 431 EK+E+++ +++ A+K +P+F+QF KD SVP+ TR+ Sbjct: 61 ASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRL 109
>ATPO_BOVIN (P13621) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 35.0 bits (79), Expect = 0.077 Identities = 22/90 (24%), Positives = 40/90 (44%) Frame = +3 Query: 162 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 341 +AA + ++Q R +T V +P ++ P +YG G Y E+VE Sbjct: 1 MAALAVSGLSQQVRCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEK 60 Query: 342 EIGDVVGAVKKSPMFSQFIKDSSVPKATRV 431 E+ VG + K P + + + V ++ +V Sbjct: 61 ELLR-VGQILKEPKMAASLLNPYVKRSVKV 89
>ATPO_RAT (Q06647) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 33.9 bits (76), Expect = 0.17 Identities = 20/90 (22%), Positives = 41/90 (45%) Frame = +3 Query: 162 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 341 +AA ++ +++ R +T V +P ++ P +YG G Y ++VE Sbjct: 1 MAAPATSVLSRQVRSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEK 60 Query: 342 EIGDVVGAVKKSPMFSQFIKDSSVPKATRV 431 E+ VG + K P S + + + ++ +V Sbjct: 61 ELLR-VGQLLKDPKVSLAVLNPYIKRSIKV 89
>ATPO_MOUSE (Q9DB20) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 33.5 bits (75), Expect = 0.22 Identities = 20/90 (22%), Positives = 40/90 (44%) Frame = +3 Query: 162 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 341 +AA ++ +++ R +T V +P ++ P +YG G Y ++VE Sbjct: 1 MAAPAASGLSRQVRSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEK 60 Query: 342 EIGDVVGAVKKSPMFSQFIKDSSVPKATRV 431 E+ VG + K P S + + + + +V Sbjct: 61 ELLR-VGQLLKDPKVSLAVLNPYIKRTVKV 89
>ATPO_PEA (P17604) ATP synthase delta chain, mitochondrial (EC 3.6.3.14)| (Oligomycin sensitivity conferral protein) (OSCP) (Fragment) Length = 38 Score = 32.3 bits (72), Expect = 0.50 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = +3 Query: 216 QVDKPAENKIKVPKALYGGTGNY 284 QV E KIKVP A++GG+GNY Sbjct: 2 QVPGZKETKIKVPIAMFGGSGNY 24
>ATPO_PONPY (Q5RD23) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%) Frame = +3 Query: 162 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 341 +A + +++ R +T V +P ++ P +YG G Y E+VE Sbjct: 1 MATPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK 60 Query: 342 EIGDVVGAVKK----SPMFSQFIKDS 407 E+ V +K+ +P+ + ++K S Sbjct: 61 ELLRVAQILKEPKVAAPVLNPYVKRS 86
>ATPO_HUMAN (P48047) ATP synthase O subunit, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) Length = 213 Score = 30.4 bits (67), Expect = 1.9 Identities = 20/90 (22%), Positives = 39/90 (43%) Frame = +3 Query: 162 LAATESAAVAQVSRGLATQVDKPAENKIKVPKALYGGTGNYXXXXXXXXXXXXXXEKVES 341 +AA + +++ R +T V +P ++ P +YG G Y E+VE Sbjct: 1 MAAPAVSGLSRQVRCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEK 60 Query: 342 EIGDVVGAVKKSPMFSQFIKDSSVPKATRV 431 E+ V + K P + + + V ++ +V Sbjct: 61 ELLR-VAQILKEPKVAASVLNPYVKRSIKV 89
>ATPO_SCHPO (O74479) ATP synthase subunit 5, mitochondrial precursor (EC| 3.6.3.14) (Oligomycin sensitivity conferral protein) (OSCP) (ATP synthase chain 5) Length = 216 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +3 Query: 252 PKALYGGTGNYXXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQFIKDSSVPKATR 428 P LYG G+Y + VE + + G +++ P F Q+I S P TR Sbjct: 33 PVQLYGLDGSYASSLYTAAVKESKLDNVEKALNKLSGVLQQRPEFEQYI---SSPWLTR 88
>POL_JSRV (P31623) Pol polyprotein [Contains: Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 870 Score = 28.9 bits (63), Expect = 5.5 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = -3 Query: 383 HRALLDCPYNIANLGFNFF--QRICVGCCKEQRTSVVAGATIQSFWNLYLVLRRLIHLRR 210 H+ALL P + FN F VG + T + G T NL+ ++++++H R+ Sbjct: 500 HQALLTVPTS-----FNLFTDSSYVVGALQMIETVPIIGTTSPEVLNLFTLIQQVLHCRQ 554 Query: 209 KP 204 P Sbjct: 555 HP 556
>YQAJ_BACSU (P45907) Hypothetical protein yqaJ| Length = 319 Score = 28.9 bits (63), Expect = 5.5 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +3 Query: 225 KPAENKIK--VPKALYGGTGNYXXXXXXXXXXXXXXEKVESEIGDVVGAVKKSPMFSQF- 395 K EN+IK + A YG GNY +K++ + DV VKK F +F Sbjct: 255 KELENQIKHEMKDAEYGFIGNYQACWKPVVSNRIDTKKLKDQFPDVYEKVKKETHFRRFG 314 Query: 396 IKDSS 410 IK+ S Sbjct: 315 IKEVS 319
>ASPM_BOVIN (P62285) Abnormal spindle-like microcephaly-associated protein| homolog (Fragment) Length = 3371 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 308 CCKEQRTSVVAGATIQSFWNLYLVLRRLIHLR 213 C +E+R +VV IQS++ ++ LR+ IHLR Sbjct: 1393 CAQEERAAVV----IQSWYRMHRELRKYIHLR 1420
>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)| (Ubiquitin thioesterase 32) (Ubiquitin-specific-processing protease 32) (Deubiquitinating enzyme 32) (NY-REN-60 antigen) Length = 1604 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Frame = +2 Query: 245 KGSKSSVW--WHRQLR*CVVPCSSQRKFVGKS*IR-DW 349 K S W W+R R C + C R F+G + I DW Sbjct: 1162 KDGNSCAWCPWYRFCRGCKIDCGEDRAFIGNAYIAVDW 1199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,913,061 Number of Sequences: 219361 Number of extensions: 760215 Number of successful extensions: 1665 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1644 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1665 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
