>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +1

Query: 295 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTS
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTS 91

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +1

Query: 295 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTS
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTS 91

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +1

Query: 298 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           LEL V R ++ D  +   +L ++++ I+++TSSMT+
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTA 83

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 298 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTS 405
           LEL V   QD  P +   +L  +++ IR++TSSMT+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTA 92

>ANLN_DROME (Q9V4P1) Actin-binding protein anillin (Actin-binding protein 8)|
           (ABP8)
          Length = 1239

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 8   SKAEILQKINPHAAAPSRLRTTRPPNPSQPVSAVA 112
           S + +  +  P A APSR+    PP P  P++A++
Sbjct: 498 SDSSVAAQARPPAPAPSRVVRPMPPPPPPPIAALS 532

>CHS4_NEUCR (Q01285) Chitin synthase 4 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 4) (Class-IV chitin
           synthase 4)
          Length = 1195

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASPS--------APSPNRIRPA 131
           P+QQ+RV S+   P TL SP+        AP+P    P+
Sbjct: 6   PSQQQRVPSISSFPETLPSPNPNVERDPLAPTPEPAHPS 44

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +1

Query: 322 QDVDPGVQRLALESMRQEIRSATSSMTS 405
           Q+ D  + + ALE+M+  I+++TSSMT+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTA 75

>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASPSAPS-PNRIRPASH 137
           PT ++  A +PL P   A P+ P  P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.124    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,023,380
Number of Sequences: 219361
Number of extensions: 309123
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)