ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 129 2e-27
2gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.3
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.3
4gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, comp... 40 1.3
5emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 1.3
6emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0... 40 1.3
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.3
8dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 1.3
9dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 1.3
10dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.3
11gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 1.3
12gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complet... 38 5.1
13gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 5.1
14ref|XM_369540.1| Magnaporthe grisea 70-15 chromosome III predict... 38 5.1
15emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment ... 38 5.1

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  129 bits (65), Expect = 2e-27
 Identities = 98/105 (93%), Gaps = 3/105 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   caccacagcgagctaacttagcaagcgtgccacactccccagagatcgagcgaagatgtt 67
           |||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |
Sbjct: 12  caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc-aagatgct 68

                                                        
Query: 68  tggcgtcggcggcatcgtgagcgacctgacggggggcctccgggg 112
           ||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 69  tggcgtcggcggcatcgtgagcgacttgacggggggcatccgggg 113



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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
             map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ggcgtcggcggcatcgtgag 88
             ||||||||||||||||||||
Sbjct: 52268 ggcgtcggcggcatcgtgag 52287



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 69       ggcgtcggcggcatcgtgag 88
                ||||||||||||||||||||
Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052



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>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 74     cggcggcatcgtgagcgacctgac 97
              ||||||||||| ||||||||||||
Sbjct: 205636 cggcggcatcgagagcgacctgac 205659



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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    cggcggcatcgtgagcgacctgac 97
             ||||||||||| ||||||||||||
Sbjct: 80122 cggcggcatcgagagcgacctgac 80099



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>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128559

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     ggcgtcggcggcatcgtgag 88
              ||||||||||||||||||||
Sbjct: 103984 ggcgtcggcggcatcgtgag 104003



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 69       ggcgtcggcggcatcgtgag 88
                ||||||||||||||||||||
Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 69      ggcgtcggcggcatcgtgagcgac 92
               |||||||||||||||||| |||||
Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     ggcgtcggcggcatcgtgagcgac 92
              |||||||||||||||||| |||||
Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329



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>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full
           insert sequence
          Length = 1556

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 69  ggcgtcggcggcatcgtgag 88
           ||||||||||||||||||||
Sbjct: 613 ggcgtcggcggcatcgtgag 594



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 69     ggcgtcggcggcatcgtgagcgac 92
              |||||||||||||||||| |||||
Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756



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>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence
          Length = 187392

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 92     cctgacggggggcctccgg 110
              |||||||||||||||||||
Sbjct: 106900 cctgacggggggcctccgg 106882



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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 69      ggcgtcggcggcatcgtga 87
               |||||||||||||||||||
Sbjct: 3161120 ggcgtcggcggcatcgtga 3161102



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>ref|XM_369540.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG05924.4)
            partial mRNA
          Length = 1686

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 71   cgtcggcggcatcgtgagc 89
            |||||||||||||||||||
Sbjct: 1401 cgtcggcggcatcgtgagc 1419



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>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24
          Length = 303250

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 75     ggcggcatcgtgagcgacc 93
              |||||||||||||||||||
Sbjct: 116763 ggcggcatcgtgagcgacc 116745


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 553,584
Number of Sequences: 3902068
Number of extensions: 553584
Number of successful extensions: 38318
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37982
Number of HSP's gapped (non-prelim): 333
length of query: 112
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 91
effective length of database: 17,151,101,840
effective search space: 1560750267440
effective search space used: 1560750267440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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