Clone Name | bastl23h12 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 129 bits (65), Expect = 2e-27 Identities = 98/105 (93%), Gaps = 3/105 (2%) Strand = Plus / Plus Query: 8 caccacagcgagctaacttagcaagcgtgccacactccccagagatcgagcgaagatgtt 67 |||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | Sbjct: 12 caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgagc-aagatgct 68 Query: 68 tggcgtcggcggcatcgtgagcgacctgacggggggcctccgggg 112 ||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 69 tggcgtcggcggcatcgtgagcgacttgacggggggcatccgggg 113
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cggcggcatcgtgagcgacctgac 97 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 cggcggcatcgtgagcgacctgac 97 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 ggcgtcggcggcatcgtgagcgac 92 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgagcgac 92 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggcgtcggcggcatcgtgag 88 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 ggcgtcggcggcatcgtgagcgac 92 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756
>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence Length = 187392 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 cctgacggggggcctccgg 110 ||||||||||||||||||| Sbjct: 106900 cctgacggggggcctccgg 106882
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 ggcgtcggcggcatcgtga 87 ||||||||||||||||||| Sbjct: 3161120 ggcgtcggcggcatcgtga 3161102
>ref|XM_369540.1| Magnaporthe grisea 70-15 chromosome III predicted protein (MG05924.4) partial mRNA Length = 1686 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 cgtcggcggcatcgtgagc 89 ||||||||||||||||||| Sbjct: 1401 cgtcggcggcatcgtgagc 1419
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 ggcggcatcgtgagcgacc 93 ||||||||||||||||||| Sbjct: 116763 ggcggcatcgtgagcgacc 116745 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 553,584 Number of Sequences: 3902068 Number of extensions: 553584 Number of successful extensions: 38318 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37982 Number of HSP's gapped (non-prelim): 333 length of query: 112 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 91 effective length of database: 17,151,101,840 effective search space: 1560750267440 effective search space used: 1560750267440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)