ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl23h08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full insert sequence Length = 3262 Score = 208 bits (105), Expect = 5e-51 Identities = 129/137 (94%) Strand = Plus / Plus Query: 82 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 141 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 158 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 217 Query: 142 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaaggcggcggcgtgta 201 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 218 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaaggcggcggcgtgta 277 Query: 202 tggaggtcggcgtgggc 218 ||||||| ||||||||| Sbjct: 278 tggaggttggcgtgggc 294
>ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2841 Score = 159 bits (80), Expect = 4e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 82 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 141 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 35 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 94 Query: 142 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 189 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 95 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 142 Score = 52.0 bits (26), Expect = 7e-04 Identities = 29/30 (96%) Strand = Plus / Plus Query: 189 gcggcggcgtgtatggaggtcggcgtgggc 218 |||||||||||||||||||| ||||||||| Sbjct: 202 gcggcggcgtgtatggaggttggcgtgggc 231
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 4e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 82 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 141 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 32978328 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 32978387 Query: 142 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 189 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32978388 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 32978435 Score = 159 bits (80), Expect = 4e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 82 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 141 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 32958783 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 32958842 Query: 142 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 189 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 32958843 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 32958890 Score = 63.9 bits (32), Expect = 2e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 187 aggcggcggcgtgtatggaggtcggcgtgggc 218 |||||||||||||||||||||||||||||||| Sbjct: 32978568 aggcggcggcgtgtatggaggtcggcgtgggc 32978599 Score = 56.0 bits (28), Expect = 5e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 187 aggcggcggcgtgtatggaggtcggcgtgggc 218 |||||||||||||||||||||| ||||||||| Sbjct: 32959022 aggcggcggcgtgtatggaggttggcgtgggc 32959053
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 159 bits (80), Expect = 4e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 82 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 141 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 44556 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 44615 Query: 142 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 189 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 44616 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 44663 Score = 159 bits (80), Expect = 4e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 82 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 141 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 25011 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 25070 Query: 142 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 189 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 25071 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 25118 Score = 63.9 bits (32), Expect = 2e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 187 aggcggcggcgtgtatggaggtcggcgtgggc 218 |||||||||||||||||||||||||||||||| Sbjct: 44796 aggcggcggcgtgtatggaggtcggcgtgggc 44827 Score = 56.0 bits (28), Expect = 5e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 187 aggcggcggcgtgtatggaggtcggcgtgggc 218 |||||||||||||||||||||| ||||||||| Sbjct: 25250 aggcggcggcgtgtatggaggttggcgtgggc 25281
>ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2838 Score = 157 bits (79), Expect = 2e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 82 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 141 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 23 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 82 Query: 142 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaag 188 |||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 83 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaag 129 Score = 60.0 bits (30), Expect = 3e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 189 gcggcggcgtgtatggaggtcggcgtgggc 218 |||||||||||||||||||||||||||||| Sbjct: 190 gcggcggcgtgtatggaggtcggcgtgggc 219
>ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2997 Score = 115 bits (58), Expect = 6e-23 Identities = 85/94 (90%) Strand = Plus / Plus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 130 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 189 Query: 165 atcagcgacgccgacaccgacaaggcggcggcgt 198 |||||||| |||||||||||||||||||||||| Sbjct: 190 gtcagcgaccccgacaccgacaaggcggcggcgt 223
>ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3199 Score = 107 bits (54), Expect = 1e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 165 atcagcgacgccgacaccgacaaggcggcggcgt 198 |||||||| |||||||||||||||||||||||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgt 337
>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full insert sequence Length = 3200 Score = 107 bits (54), Expect = 1e-20 Identities = 84/94 (89%) Strand = Plus / Plus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 165 atcagcgacgccgacaccgacaaggcggcggcgt 198 |||||||| |||||||||||||||||||||||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgt 337
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 1e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 22901086 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 22901027 Query: 165 atcagcgacgccgacaccgacaagg 189 |||||||| ||||||||||||||| Sbjct: 22901026 gtcagcgaccccgacaccgacaagg 22901002 Score = 89.7 bits (45), Expect = 3e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 22937406 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 22937347 Query: 165 atcagcgacgccgacaccgacaagg 189 ||||||||| |||||||||| |||| Sbjct: 22937346 atcagcgaccccgacaccgataagg 22937322 Score = 89.7 bits (45), Expect = 3e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 22918850 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 22918791 Query: 165 atcagcgacgccgacaccgacaagg 189 |||||||| ||||||||||||||| Sbjct: 22918790 gtcagcgaccccgacaccgacaagg 22918766
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 97.6 bits (49), Expect = 1e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 94353 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 94294 Query: 165 atcagcgacgccgacaccgacaagg 189 |||||||| ||||||||||||||| Sbjct: 94293 gtcagcgaccccgacaccgacaagg 94269 Score = 89.7 bits (45), Expect = 3e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 112117 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 112058 Query: 165 atcagcgacgccgacaccgacaagg 189 |||||||| ||||||||||||||| Sbjct: 112057 gtcagcgaccccgacaccgacaagg 112033
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 89.7 bits (45), Expect = 3e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 12620 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 12561 Query: 165 atcagcgacgccgacaccgacaagg 189 ||||||||| |||||||||| |||| Sbjct: 12560 atcagcgaccccgacaccgataagg 12536
>gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (CCG)X10, closest to marker R2561, genomic sequence Length = 230 Score = 73.8 bits (37), Expect = 2e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 105 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 164 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 77 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 18 Query: 165 atcagcgacgccgacac 181 |||||||| ||||||| Sbjct: 17 gtcagcgaccccgacac 1
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gagtaccgccgcctgctgct 139 |||||||||||||||||||| Sbjct: 3721129 gagtaccgccgcctgctgct 3721148
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gagtaccgccgcctgctgct 139 |||||||||||||||||||| Sbjct: 1356741 gagtaccgccgcctgctgct 1356760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,043,690 Number of Sequences: 3902068 Number of extensions: 1043690 Number of successful extensions: 71575 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71141 Number of HSP's gapped (non-prelim): 434 length of query: 218 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 196 effective length of database: 17,147,199,772 effective search space: 3360851155312 effective search space used: 3360851155312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
