ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl23h04 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 57.0 bits (136), Expect = 1e-08 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 9/73 (12%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGK 364 +REFLRK +GK Sbjct: 81 PAREFLRKKLIGK 93 Score = 32.0 bits (71), Expect = 0.38 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGK 364 +REFLRK +GK Sbjct: 402 AREFLRKKLIGK 413
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 56.6 bits (135), Expect = 1e-08 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 15/92 (16%) Frame = +2 Query: 134 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR 295 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 296 RGGV---------DEPFAWESREFLRKLCVGK 364 R DEP+A+ +REFLRK +GK Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGK 93 Score = 31.2 bits (69), Expect = 0.65 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGK 364 +REFLRK +GK Sbjct: 402 AREFLRKKLIGK 413
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 56.2 bits (134), Expect = 2e-08 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 15/89 (16%) Frame = +2 Query: 143 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGG 304 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 305 V---------DEPFAWESREFLRKLCVGK 364 DEP+A+ +REFLRK +GK Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGK 92 Score = 31.2 bits (69), Expect = 0.65 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 328 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 329 SREFLRKLCVGK 364 +REFLRK +GK Sbjct: 401 AREFLRKKLIGK 412
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 55.8 bits (133), Expect = 2e-08 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 9/85 (10%) Frame = +2 Query: 137 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRG----- 301 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 302 ----GVDEPFAWESREFLRKLCVGK 364 DEP+A+++REF+RK +GK Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGK 93 Score = 31.2 bits (69), Expect = 0.65 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 325 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 326 ESREFLRKLCVGK 364 E+REFLRK +GK Sbjct: 403 EAREFLRKKLIGK 415
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 55.1 bits (131), Expect = 4e-08 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 9/73 (12%) Frame = +2 Query: 173 RGKVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGV---------DEPFAW 325 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 326 ESREFLRKLCVGK 364 +REFLRK +GK Sbjct: 81 PAREFLRKKLIGK 93 Score = 32.0 bits (71), Expect = 0.38 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Frame = +2 Query: 179 KVKAVTSGDCLLIMGSTKAEVPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 328 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 329 SREFLRKLCVGK 364 +REFLRK +GK Sbjct: 402 AREFLRKKLIGK 413
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +2 Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEVPPEKSITLSYLM 277 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 278 APRLA 292 PR A Sbjct: 292 LPRTA 296
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 30.0 bits (66), Expect = 1.4 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -3 Query: 348 FLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGTSALVLPMMRRQSPEVTAFTLPL 172 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 171 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 22 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +2 Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 226 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>CRTE_RHOCA (P17060) Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)| (GGPP synthetase) (Farnesyltranstransferase) Length = 289 Score = 28.5 bits (62), Expect = 4.2 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +2 Query: 188 AVTSGDCLLIMG----STKAEVPPEKSITLSYLMAPRLARRGGVDEPFAWES 331 AV +GD LLI G + V P++++ L + RGG+ AWES Sbjct: 106 AVLAGDSLLIRGFEVLADVGAVNPDRALKLISKLGQLSGARGGICAGQAWES 157
>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)| Length = 3218 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 232 GRGPAREVHHSVIPYGPKAGSSWW 303 G G R H+SVIP GP++G W Sbjct: 1958 GNGCYRAHHYSVIPLGPQSGLISW 1981
>LPRF_MYCTU (P65314) Putative lipoprotein lprF precursor| Length = 261 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -3 Query: 339 NSLLSQANGSSTPPRRASLGAI 274 N L+SQA GS P R +SLGA+ Sbjct: 2 NGLISQACGSHRPRRPSSLGAV 23
>LPRF_MYCBO (P65315) Putative lipoprotein lprF precursor| Length = 261 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -3 Query: 339 NSLLSQANGSSTPPRRASLGAI 274 N L+SQA GS P R +SLGA+ Sbjct: 2 NGLISQACGSHRPRRPSSLGAV 23
>RHG26_HUMAN (Q9UNA1) Rho-GTPase-activating protein 26 (Oligophrenin-1-like| protein) (GTPase regulator associated with focal adhesion kinase) Length = 814 Score = 27.7 bits (60), Expect = 7.2 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Frame = -3 Query: 342 RNSLLSQANGS-STPPRRASLGAIRYDRVMDFSGGTSALVLPMMRRQSPEVTAFTLPLSH 166 RNS+++ + S S+ P + M+ S A+V P P + T PLS Sbjct: 616 RNSIINSSLESVSSNPNSILNSSSSLQPNMNSSDPDLAVVKPTRPNSLPPNPSPTSPLS- 674 Query: 165 PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVW 67 P P+F A +P + S P+R VW Sbjct: 675 PSWPMFSAPSSPMPTSSTSSDSSPVRSVAGFVW 707
>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAI) Length = 767 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 319 KWLIDSTTTSQPWGHKV*QSDGLLWRDLCL 230 KW +D+T ++PWG Q+DG R + + Sbjct: 443 KWNVDNTAFTEPWGRP--QNDGPALRSIAI 470
>COBQ_MYCTU (P0A532) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 151 HRSFRMAKGQGEGCDLWGLPSHHGEHQGRGPAREVHHSVIPYGPKAGSSW 300 H+ R+ +G+G G G HHG RG E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRIT-RGDTAEEFLGGARDGPVFGTMW 423
>COBQ_MYCBO (P0A533) Cobyric acid synthase| Length = 494 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = +1 Query: 151 HRSFRMAKGQGEGCDLWGLPSHHGEHQGRGPAREVHHSVIPYGPKAGSSW 300 H+ R+ +G+G G G HHG RG E GP G+ W Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRIT-RGDTAEEFLGGARDGPVFGTMW 423
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/57 (31%), Positives = 25/57 (43%) Frame = -3 Query: 327 SQANGSSTPPRRASLGAIRYDRVMDFSGGTSALVLPMMRRQSPEVTAFTLPLSHPEA 157 S A S +P RAS GA+ + S +++ P+M P LPL P A Sbjct: 116 SLATPSPSPEARASPGALEFGDTFSSSFSQTSVCSPLMEASGP-----VLPLGSPVA 167
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -3 Query: 111 SGLRLPIRDPGEGVWPAG*SLLS-RPDPDPN 22 +GL + ++DP +G+ P G L+ + DP PN Sbjct: 2393 AGLEVKVKDPPKGMIPPGTQLVKPKADPQPN 2423
>BPHY_DEIRA (Q9RZA4) Bacteriophytochrome (EC 2.7.13.3) (Phytochrome-like| protein) Length = 755 Score = 27.7 bits (60), Expect = 7.2 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Frame = -3 Query: 330 LSQANGSSTPPRRASLGAIRY--DRVMDFSGGTSALVLPMMRRQSPEVTAFTLPLSHPEA 157 L A+G S + SL A + G T A +LP Q P + A LP P+A Sbjct: 41 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLP---EQWPALQA-ALPPGCPDA 96 Query: 156 PVFDAMIAPWDWPAASGLRLPIRDPGE 76 + A + DWPAA L L + GE Sbjct: 97 LQYRATL---DWPAAGHLSLTVHRVGE 120
>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan| 1,4-alpha-glucosidase) (1,4-alpha-D-glucan glucohydrolase) (GAII) Length = 768 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 319 KWLIDSTTTSQPWGHKV*QSDGLLWRDLCL 230 KW +D+T ++PWG Q+DG R + + Sbjct: 444 KWNVDNTAFTEPWGRP--QNDGPALRSIAI 471
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 27.3 bits (59), Expect = 9.3 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Frame = -3 Query: 321 ANGSSTPPRRASLGAIRYDRVMDFSGG----TSALVLPMMRRQSPEVTAFTLPLSHPEAP 154 A G ++P +RASL D +GG ++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 153 VFDAMIAPWDWPAASG 106 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>TYRO_TRISI (P55026) Tyrosinase precursor (EC 1.14.18.1) (Monophenol| monooxygenase) (Fragment) Length = 273 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +1 Query: 184 EGCDLW-GLPSHHGEHQGRGPAREVHHSVIPYGPK 285 E C LW G S GE GRG +E+ S P GP+ Sbjct: 34 ECCPLWAGDGSPCGELSGRGSCQEILLSRAPLGPQ 68 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,954,013 Number of Sequences: 219361 Number of extensions: 1063378 Number of successful extensions: 2989 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2921 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2984 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
