ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWC27_ASHGO (Q75A74) Peptidyl-prolyl isomerase CWC27 (EC 5.2.1.8) 30 1.3
2E75_GALME (P50239) Ecdysone-inducible protein E75 30 1.7
3PK1L1_HUMAN (Q8TDX9) Polycystic kidney disease 1-like 1 protein ... 28 4.8
4MEF2A_XENLA (Q03414) Myocyte-specific enhancer factor 2A homolog... 28 4.8
5HEY1_MOUSE (Q9WV93) Hairy/enhancer-of-split related with YRPW mo... 28 8.2

>CWC27_ASHGO (Q75A74) Peptidyl-prolyl isomerase CWC27 (EC 5.2.1.8)|
          Length = 303

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +2

Query: 158 DRITAAAPNHPYPESRCAALHSPAPA 235
           DR   AAP    P SRCA+L  PAPA
Sbjct: 240 DRRAEAAPPTDGPPSRCASLAGPAPA 265



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>E75_GALME (P50239) Ecdysone-inducible protein E75|
          Length = 711

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 179 PNHPYPESRCAALHSPAPARSP 244
           P+HP+P S     HSP P R+P
Sbjct: 582 PHHPHPASPAHPAHSPRPIRAP 603



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>PK1L1_HUMAN (Q8TDX9) Polycystic kidney disease 1-like 1 protein|
           (Polycystin-1L1)
          Length = 2849

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 3   KPTKQMENRVPL--SSEFPTPPISYSAA*FALPRRSNLTASTGVASI 137
           +PT+    RVPL   S FPT P S       +PR  + TAS   + I
Sbjct: 223 RPTQTSSQRVPLWPISHFPTSPRSSHGLPPGIPRTPSFTASQSGSEI 269



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>MEF2A_XENLA (Q03414) Myocyte-specific enhancer factor 2A homolog (Serum|
           response factor-like protein 2) (SL-2)
          Length = 516

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 25  IGCRSPPNSQPPQ*VTPQ-LSSHSHADQISQPAQE*LA*HSSSIIGSD 165
           I  +S P S P   +TP    SH H     +P  + L+  SSS  GSD
Sbjct: 431 INIKSEPISPPRDRITPSGFQSHQHHQHQPRPEMDSLSSSSSSYDGSD 478



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>HEY1_MOUSE (Q9WV93) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy|
           and enhancer of split-related 1) (HESR-1)
          Length = 299

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 167 TAAAPNHPYPESRCAALHSPAPA-RSP 244
           TAA+P  P+ + R A+ H  APA R+P
Sbjct: 206 TAASPTEPHHQGRLASAHPEAPALRAP 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,150,370
Number of Sequences: 219361
Number of extensions: 584935
Number of successful extensions: 1482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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