ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC122539.4| Mus musculus BAC clone RP24-550H10 from chromosom... 40 3.2
2gb|AF383152.1|AF383152 Manihot esculenta phenylalanine ammonia-l... 40 3.2
3gb|AF383150.1|AF383150 Manihot esculenta phenylalanine ammonia-l... 40 3.2

>gb|AC122539.4| Mus musculus BAC clone RP24-550H10 from chromosome 10, complete
             sequence
          Length = 146242

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   caggagtagctagcatagcactcc 144
             |||||||||||| |||||||||||
Sbjct: 10038 caggagtagctaacatagcactcc 10061



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>gb|AF383152.1|AF383152 Manihot esculenta phenylalanine ammonia-lyase 2 (PAL2) gene, complete
            cds
          Length = 6447

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  atcaaatctcacagccagca 120
            ||||||||||||||||||||
Sbjct: 4759 atcaaatctcacagccagca 4778



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>gb|AF383150.1|AF383150 Manihot esculenta phenylalanine ammonia-lyase 3 (PAL3) mRNA,
           partial cds
          Length = 1126

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 atcaaatctcacagccagca 120
           ||||||||||||||||||||
Sbjct: 118 atcaaatctcacagccagca 137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,487,657
Number of Sequences: 3902068
Number of extensions: 1487657
Number of successful extensions: 37664
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37660
Number of HSP's gapped (non-prelim): 4
length of query: 245
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 223
effective length of database: 17,147,199,772
effective search space: 3823825549156
effective search space used: 3823825549156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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