>TRUB_SYMTH (Q67P83) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 299

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -1

Query: 188 LLHTKLNPYALSRVQIFDVLAA-------QMAALGSPPRVKCRGCDATAVAIGVA 45
           L+ T+  P+ L++    + LAA         AALG  PRV   G  A  V  GVA
Sbjct: 205 LVRTRSGPFVLAQAATLEELAAGKARLLPPAAALGDMPRVTVSGRAAARVLHGVA 259

>PME3_CAEEL (Q867X0) Poly(ADP-ribose) glycohydrolase pme-3 (EC 3.2.1.143) (Poly|
           ADP-ribose metabolism enzyme 3)
          Length = 781

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +1

Query: 55  MATAVASQPRHFTLGGEPR-AAICAASTSKICTLDKAYGFSFVCRSVVDLRSKKFHSQIS 231
           +A  VA +P HF   GEP  AA C     ++   D   G  F   +   L  K F   + 
Sbjct: 697 IAAGVADRPLHFCSFGEPELAAKCKKIIERMKQKDVTLGMLFSMINNTGLPHKHFEFYVF 756

Query: 232 KR-KCYLTSS 258
            R   YL+SS
Sbjct: 757 DRISTYLSSS 766

>PTAFR_MOUSE (Q62035) Platelet-activating factor receptor (PAF-R)|
          Length = 341

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 85  HFTLGGEPRAAICAASTSKICTLDKAYGFSFVCRSVVDLRSKKFHSQISKRKCYLTSSPS 264
           H  +    +  +C  ST+  C LD    + F+ +      S+KF+S  S RKC   +S +
Sbjct: 267 HQAINDAHQITLCLLSTN--CVLDPVI-YCFLTKKFRKHLSEKFYSMRSSRKCSRATSDT 323

Query: 265 EFEKII 282
             E I+
Sbjct: 324 CTEVIV 329

>ICAM5_RABIT (Q28730) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 912

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +1

Query: 91  TLGGEPRAAICAASTSKICTLDKAYGFSFVCRSVVDLRSK---KFHSQISKRKCYLTSSP 261
           +  GEP  A  A  T+ +    + +G +F CR+ +DLR +    F +  + R+ +  + P
Sbjct: 165 SFAGEPARARGAVLTATVLARREDHGANFSCRAELDLRPQGLALFENSSAPRQLWTYALP 224

Query: 262 SEFEKII 282
            +  +++
Sbjct: 225 LDSPRLL 231

>HISX_THIDA (Q3SI67) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 434

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 58  ATAVASQPRHFTLGGEPRAAICAASTSKICTLDKAYG 168
           A A+A   R FT+GG    A  A  T  +  +DK  G
Sbjct: 178 AAAIAGVDRVFTIGGAQAVAALAYGTETVPQVDKIVG 214

>KAD4_RAT (Q9WUS0) Adenylate kinase isoenzyme 4, mitochondrial (EC 2.7.4.3)|
           (Adenylate kinase 3-like 1) (ATP-AMP transphosphorylase)
          Length = 223

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 82  RHFTLGGEPRAAICAASTSKICTLDKAYGFSFVCRSVVDLRSKKFHSQISKRKCYLTSSP 261
           +H+ L G PR  + A +  +IC +D     +    ++ D  S+++    S R   L  +P
Sbjct: 83  QHWLLDGFPRTLVQAEALDRICDVDLVISLNIPFETLKDRLSRRWIHPSSGRVYNLDFNP 142

Query: 262 SE 267
            +
Sbjct: 143 PQ 144

>MR1B2_BRARE (Q90456) Melatonin receptor type 1B Z6.2 (Fragment)|
          Length = 157

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 169 IHMLCPGCKSLMCWLRRWLPSVRLRG*SVAAATPRRSPSGL 47
           +H L P      C+LR W+  +R+R        PR  PS L
Sbjct: 69  VHFLLPIAVVTFCYLRIWVLVLRVRRRVTTDVRPRLRPSEL 109

>HISX_NITOC (Q3J7H1) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 433

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 58  ATAVASQPRHFTLGGEPRAAICAASTSKICTLDKAYG 168
           A A+A   R FT+GG    A  A  T  +  +DK  G
Sbjct: 178 AAAIAGVDRVFTVGGAQAVAALAFGTESVPRVDKIVG 214


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,445,489
Number of Sequences: 219361
Number of extensions: 1020802
Number of successful extensions: 2314
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2314
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)