ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete se... 40 0.59
2gb|AY436326.1| Homo sapiens angiotensin I converting enzyme (pep... 38 2.3
3dbj|AB229438.1| Aspergillus oryzae cDNA, contig sequence: AoEST6318 38 2.3
4dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 38 2.3
5ref|NM_001031357.1| Gallus gallus loss of heterozygosity, 12, ch... 36 9.3
6emb|AJ000760.1|MDAJ760 Malus domestica mRNA for MADS-box protein... 36 9.3
7emb|AJ720525.1| Gallus gallus mRNA for hypothetical protein, clo... 36 9.3
8gb|AC105395.1| Homo sapiens chromosome 4 clone RP11-397A19, comp... 36 9.3
9gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 36 9.3

>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
          Length = 107448

 Score = 40.1 bits (20), Expect = 0.59
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   ctctaaaccctagcggcatc 44
            ||||||||||||||||||||
Sbjct: 6518 ctctaaaccctagcggcatc 6537



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>gb|AY436326.1| Homo sapiens angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
             (ACE) gene, complete cds
          Length = 23424

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 45    ggcagggaggcccgccggg 63
             |||||||||||||||||||
Sbjct: 16351 ggcagggaggcccgccggg 16369



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>dbj|AB229438.1| Aspergillus oryzae cDNA, contig sequence: AoEST6318
          Length = 516

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 39  ggcatcggcagggaggcccgccg 61
           ||||| |||||||||||||||||
Sbjct: 456 ggcattggcagggaggcccgccg 434



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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 39    ggcatcggcagggaggcccgccg 61
             ||||| |||||||||||||||||
Sbjct: 86718 ggcattggcagggaggcccgccg 86740



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>ref|NM_001031357.1| Gallus gallus loss of heterozygosity, 12, chromosomal region 1
            (LOH12CR1), mRNA
          Length = 4392

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 25   ctctaaaccctagcggca 42
            ||||||||||||||||||
Sbjct: 1062 ctctaaaccctagcggca 1045



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>emb|AJ000760.1|MDAJ760 Malus domestica mRNA for MADS-box protein, MADS6
          Length = 958

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 8   tctctggccgtggcgagctcta 29
           |||||||||||||| |||||||
Sbjct: 135 tctctggccgtggcaagctcta 156



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>emb|AJ720525.1| Gallus gallus mRNA for hypothetical protein, clone 19j2
          Length = 4392

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 25   ctctaaaccctagcggca 42
            ||||||||||||||||||
Sbjct: 1062 ctctaaaccctagcggca 1045



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>gb|AC105395.1| Homo sapiens chromosome 4 clone RP11-397A19, complete sequence
          Length = 162281

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      gctcctctctctggccgt 18
              ||||||||||||||||||
Sbjct: 143269 gctcctctctctggccgt 143286



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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 36      agcggcatcggcagggag 53
               ||||||||||||||||||
Sbjct: 2003167 agcggcatcggcagggag 2003150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 390,487
Number of Sequences: 3902068
Number of extensions: 390487
Number of successful extensions: 19107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19087
Number of HSP's gapped (non-prelim): 20
length of query: 63
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 42
effective length of database: 17,151,101,840
effective search space: 720346277280
effective search space used: 720346277280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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