>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 32     cagacgcatcggcgccgccgccagaggcagcgc 64
              |||| ||||||||||||||||||| | ||||||
Sbjct: 857745 cagatgcatcggcgccgccgccagcgccagcgc 857777

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 18     ccccatggcggactcagacgcatcggcgccgccgccagagg 58
              |||||||||||| || |||||  ||||||||||||| ||||
Sbjct: 566505 ccccatggcggagtcggacgcggcggcgccgccgccggagg 566545

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 29      actcagacgcatcggcgccgccgcc 53
               |||| ||||||||||||||||||||
Sbjct: 1711305 actcggacgcatcggcgccgccgcc 1711281

>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 18     ccccatggcggactcagacgcatcggcgccgccgccagagg 58
              |||||||||||| || |||||  ||||||||||||| ||||
Sbjct: 156465 ccccatggcggagtcggacgcggcggcgccgccgccggagg 156505

>dbj|AK120061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I23,
          full insert sequence
          Length = 4843

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                   
Query: 18 ccccatggcggactcagacgcatcggcgccgccgccagagg 58
          |||||||||||| || |||||  ||||||||||||| ||||
Sbjct: 58 ccccatggcggagtcggacgcggcggcgccgccgccggagg 98

>dbj|AK099025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124E19, full
           insert sequence
          Length = 3906

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 18  ccccatggcggactcagacgcatcggcgccgccgccagagg 58
           |||||||||||| || |||||  ||||||||||||| ||||
Sbjct: 98  ccccatggcggagtcggacgcggcggcgccgccgccggagg 138

>dbj|AK068995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169C15, full
           insert sequence
          Length = 2815

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 18  ccccatggcggactcagacgcatcggcgccgccgccagagg 58
           |||||||||||| || |||||  ||||||||||||| ||||
Sbjct: 99  ccccatggcggagtcggacgcggcggcgccgccgccggagg 139

>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      accctcaaaccctaatcccc 21
              ||||||||||||||||||||
Sbjct: 121126 accctcaaaccctaatcccc 121145

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 46      ccgccgccagaggcagcgcc 65
               ||||||||||||||||||||
Sbjct: 2024589 ccgccgccagaggcagcgcc 2024570

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 40      tcggcgccgccgccagaggc 59
               ||||||||||||||||||||
Sbjct: 3681154 tcggcgccgccgccagaggc 3681135

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 43     gcgccgccgccagaggcagcgcc 65
              |||||||||||||| ||||||||
Sbjct: 446034 gcgccgccgccagacgcagcgcc 446056

>ref|XM_469243.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1014

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 41  cggcgccgccgccagaggc 59
           |||||||||||||||||||
Sbjct: 128 cggcgccgccgccagaggc 146

>gb|BT012478.1| Drosophila melanogaster RE15368 full insert cDNA
          Length = 1715

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ttccagtcgtagacctcgt 95
            |||||||||||||||||||
Sbjct: 1246 ttccagtcgtagacctcgt 1228

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 41       cggcgccgccgccagaggc 59
                |||||||||||||||||||
Sbjct: 26318763 cggcgccgccgccagaggc 26318745

>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete
             sequence
          Length = 134728

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    cggcgccgccgccagaggc 59
             |||||||||||||||||||
Sbjct: 71877 cggcgccgccgccagaggc 71895

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 78     tccagtcgtagacctcgtc 96
              |||||||||||||||||||
Sbjct: 746475 tccagtcgtagacctcgtc 746457

>emb|AJ244019.1|SCO244019 Streptomyces coelicolor A3(2) dnaG gene and flanking genes
          Length = 4761

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   cgtagacctcgtcgacgcc 102
            |||||||||||||||||||
Sbjct: 3163 cgtagacctcgtcgacgcc 3145

>emb|CR725338.2|CNS0GMM8 Tetraodon nigroviridis full-length cDNA
          Length = 1360

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  ggcagcgcccgaggtgaag 75
           |||||||||||||||||||
Sbjct: 144 ggcagcgcccgaggtgaag 162

>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     cgtagacctcgtcgacgcc 102
              |||||||||||||||||||
Sbjct: 233116 cgtagacctcgtcgacgcc 233134

>ref|NM_170401.1| Drosophila melanogaster Ef1 CG11901-RB, transcript variant B
            (Ef1gamma), mRNA
          Length = 1695

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ttccagtcgtagacctcgt 95
            |||||||||||||||||||
Sbjct: 1246 ttccagtcgtagacctcgt 1228

>ref|NM_143743.1| Drosophila melanogaster Ef1 CG11901-RA, transcript variant A
            (Ef1gamma), mRNA
          Length = 1721

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ttccagtcgtagacctcgt 95
            |||||||||||||||||||
Sbjct: 1272 ttccagtcgtagacctcgt 1254

>gb|AC063973.10|AC063973 Genomic Sequence For Arabidopsis thaliana Clone T6F08 From Chromosome
             V, complete sequence
          Length = 138940

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     ctcaaaccctaatccccat 23
             |||||||||||||||||||
Sbjct: 83761 ctcaaaccctaatccccat 83779

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 41       cggcgccgccgccagaggc 59
                |||||||||||||||||||
Sbjct: 26410072 cggcgccgccgccagaggc 26410054

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    cgccgccagaggcagcgcc 65
             |||||||||||||||||||
Sbjct: 64527 cgccgccagaggcagcgcc 64509

>gb|AC007855.5|AC007855 Drosophila melanogaster, chromosome 3R, region 98F-99A, BAC clone
              BACR22E21, complete sequence
          Length = 183576

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     ttccagtcgtagacctcgt 95
              |||||||||||||||||||
Sbjct: 117282 ttccagtcgtagacctcgt 117264

>gb|AC012327.6|AC012327 Arabidopsis thaliana chromosome 3 BAC T14A11 genomic sequence, complete
             sequence
          Length = 86585

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ctcaaaccctaatccccat 23
             |||||||||||||||||||
Sbjct: 25339 ctcaaaccctaatccccat 25321

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 43     gcgccgccgccagaggcagcgcc 65
              |||||||||||||| ||||||||
Sbjct: 445835 gcgccgccgccagacgcagcgcc 445857

>gb|AF111213.1|AF111213 Cyprinella lepida NADH dehydrogenase subunit 2 (ND2) gene,
           mitochondrial gene encoding mitochondrial protein,
           complete cds
          Length = 1047

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 18  ccccatggcggactcagac 36
           |||||||||||||||||||
Sbjct: 938 ccccatggcggactcagac 956

>dbj|AB046436.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T32O2
          Length = 108720

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     ctcaaaccctaatccccat 23
             |||||||||||||||||||
Sbjct: 70894 ctcaaaccctaatccccat 70912

>gb|AF148814.1|AF148814 Drosophila melanogaster translation elongation factor 1 gamma gene,
            complete cds
          Length = 2284

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ttccagtcgtagacctcgt 95
            |||||||||||||||||||
Sbjct: 1487 ttccagtcgtagacctcgt 1469

>gb|AF148813.1|AF148813 Drosophila melanogaster translation elongation factor 1 gamma mRNA,
           partial cds
          Length = 1418

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  ttccagtcgtagacctcgt 95
           |||||||||||||||||||
Sbjct: 971 ttccagtcgtagacctcgt 953

>gb|AE003768.2| Drosophila melanogaster chromosome 3R, section 106 of 118 of the complete
              sequence
          Length = 243118

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     ttccagtcgtagacctcgt 95
              |||||||||||||||||||
Sbjct: 188954 ttccagtcgtagacctcgt 188936

>gb|BT001612.1| Drosophila melanogaster RE32823 full insert cDNA
          Length = 1731

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   ttccagtcgtagacctcgt 95
            |||||||||||||||||||
Sbjct: 1272 ttccagtcgtagacctcgt 1254


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 902,373
Number of Sequences: 3902068
Number of extensions: 902373
Number of successful extensions: 70223
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69096
Number of HSP's gapped (non-prelim): 1127
length of query: 136
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 115
effective length of database: 17,151,101,840
effective search space: 1972376711600
effective search space used: 1972376711600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)