ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl23g08 |
|---|---|
| Clone Library Name | barley_pub |
>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated| protein 130) (SAP 130) (SF3b130) (Pre-mRNA splicing factor SF3b 130 kDa subunit) (STAF130) Length = 1217 Score = 76.6 bits (187), Expect = 1e-14 Identities = 42/79 (53%), Positives = 53/79 (67%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRL 253 M+LY+LTLQRATG A+ G+FSG + QEI V+RG L+LLRPDP T ++ Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSG----------TKQQEIVVSRGKILELLRPDPNTGKV 50 Query: 254 RTLLSDDVFGAIRSLAQFR 310 TLL+ +VFG IRSL FR Sbjct: 51 HTLLTVEVFGVIRSLMAFR 69
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 70.9 bits (172), Expect = 8e-13 Identities = 39/79 (49%), Positives = 49/79 (62%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRL 253 MYLY+LTLQ + V+G FSG + QEI VA+G L+LLRPD +T ++ Sbjct: 4 MYLYNLTLQASGSVNATVVGQFSG----------TRQQEIIVAKGSRLELLRPDTQTGKV 53 Query: 254 RTLLSDDVFGAIRSLAQFR 310 T+LS D FG IRSLA FR Sbjct: 54 DTVLSHDAFGVIRSLAAFR 72
>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1| Length = 1271 Score = 65.9 bits (159), Expect = 3e-11 Identities = 34/79 (43%), Positives = 47/79 (59%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRL 253 M+LYSLT+Q T A++G FSG + Q+I A G L LL+PDP ++ Sbjct: 7 MFLYSLTIQPPTAVTQALLGQFSG----------TKEQQILTASGSRLTLLQPDPRQGKV 56 Query: 254 RTLLSDDVFGAIRSLAQFR 310 TLLS D+FG +R++A FR Sbjct: 57 NTLLSHDIFGIVRAIASFR 75
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 60.1 bits (144), Expect = 1e-09 Identities = 32/79 (40%), Positives = 44/79 (55%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRL 253 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP ++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKI 56 Query: 254 RTLLSDDVFGAIRSLAQFR 310 + S DVFG IR+LA FR Sbjct: 57 TPIYSQDVFGIIRTLAAFR 75
>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1| Length = 1229 Score = 58.9 bits (141), Expect = 3e-09 Identities = 33/79 (41%), Positives = 44/79 (55%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRL 253 M+LYSL++Q + A++G FSG + Q+I A G L L RPDP ++ Sbjct: 7 MFLYSLSIQPPSTITRAILGQFSG----------TKEQQIVAASGSRLTLYRPDPTQGKV 56 Query: 254 RTLLSDDVFGAIRSLAQFR 310 L+S DVFG IR LA FR Sbjct: 57 VPLMSHDVFGIIRDLASFR 75
>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1| Length = 1226 Score = 58.5 bits (140), Expect = 4e-09 Identities = 32/79 (40%), Positives = 44/79 (55%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRL 253 M++YSLT+Q T A++G F AG+ Q+I A G L + RPDP ++ Sbjct: 7 MFMYSLTIQPPTAITQAILGQF----------AGTKEQQIVTASGSKLTIHRPDPTQGKV 56 Query: 254 RTLLSDDVFGAIRSLAQFR 310 L + DVFG IR+LA FR Sbjct: 57 IPLYTQDVFGIIRTLAAFR 75
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 54.7 bits (130), Expect = 6e-08 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT-LDLLRPDPETDR 250 M+L +LTL T AV+GSFS GS +QEI RGGT L++ + + T + Sbjct: 1 MHLLNLTLSSPTNVSTAVVGSFS----------GSKSQEILCVRGGTKLEIFKLNATTGQ 50 Query: 251 LRTLLSDDVFGAIRSLAQFR 310 L T++S + FG IR++A FR Sbjct: 51 LDTIVSTEAFGTIRNIAGFR 70
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 42.0 bits (97), Expect = 4e-04 Identities = 23/80 (28%), Positives = 44/80 (55%) Frame = +2 Query: 71 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDR 250 ++YLY+LT++ + + +++G F G +KKS QEI +A +++L + D T + Sbjct: 7 SLYLYNLTIKHPSLCIASIVGQFLG--NKKS-------QEIILANSTSIELWKADSNTGK 57 Query: 251 LRTLLSDDVFGAIRSLAQFR 310 L + FG I+ + + R Sbjct: 58 LEKIYQQASFGIIQGIDKIR 77
>RSE1_SCHPO (Q9UTT2) Pre-mRNA-splicing factor rse1 (Pre-mRNA processing protein| 12) (Spliceosome associated protein 130) Length = 1206 Score = 38.9 bits (89), Expect = 0.003 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = +2 Query: 71 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDR 250 +++LYSLT+Q + + S SG+ QEI +A L + + D R Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGK----------KAQEIVIATESRLLIYKVDATDGR 55 Query: 251 LRTLLSDDVFGAIRSLAQFR 310 + +L+ + FG IR++A R Sbjct: 56 MNCILNQNCFGIIRNVAPLR 75
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 38.9 bits (89), Expect = 0.003 Identities = 21/76 (27%), Positives = 40/76 (52%) Frame = +2 Query: 71 AMYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDR 250 ++YLY+LTL+ + + +++G F +D+ NA Q++ + TL L + E + Sbjct: 39 SVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNA-----QQLVLVSSTTLQLFEINEEAGK 93 Query: 251 LRTLLSDDVFGAIRSL 298 L S ++ G I S+ Sbjct: 94 LELQSSQNLLGIINSI 109
>RSE1_CANGA (Q6FLQ6) Pre-mRNA-splicing factor RSE1| Length = 1296 Score = 32.7 bits (73), Expect = 0.24 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKK 160 M LY LTLQR + V +V GSF GRDS + Sbjct: 1 MELYHLTLQRQSNYVHSVKGSFLGRDSNE 29
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 31.2 bits (69), Expect = 0.69 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +2 Query: 116 VCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDP--ETDRLRTLLSDDVFGAI 289 V A I FS + ++SN ++ +I + G +DL PD + LR LL+ F + Sbjct: 177 VLASIPGFSVKPRRRSNKKLTTAAQIEQTKDGKIDLETPDSILASTNLRALLNKQTFSLL 236 Query: 290 RSLAQF 307 L Q+ Sbjct: 237 PPLYQY 242
>RSE1_ASHGO (Q753D4) Pre-mRNA-splicing factor RSE1| Length = 1288 Score = 28.9 bits (63), Expect = 3.4 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%) Frame = +2 Query: 74 MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQ------------EIAVARGGTL 217 ++LY ++LQ+ V + IG F A G S + +I +A + Sbjct: 7 LHLYHVSLQKQRNYVHSCIGHFVDYRHHHIRAQGGSVEGGKKGSKWRKQLQICMATQTQV 66 Query: 218 DLLRPDPETDRLRTLLSDDVFGAIRSLA 301 +L D E RLR L + VFG I L+ Sbjct: 67 ELY--DVEEGRLRRLFTRTVFGTITGLS 92
>DHA1_STAAW (Q8NWQ3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 146 RDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSDDVF 280 R+ KS GS +IA+ +GGT++ +RP T +SD V+ Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP--------TTISDPVY 289
>DHA1_STAAS (Q6G9C3) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 146 RDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSDDVF 280 R+ KS GS +IA+ +GGT++ +RP T +SD V+ Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP--------TTISDPVY 289
>DHA1_STAAR (Q6GGW9) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 146 RDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSDDVF 280 R+ KS GS +IA+ +GGT++ +RP T +SD V+ Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP--------TTISDPVY 289
>DHA1_STAAN (P99151) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 146 RDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSDDVF 280 R+ KS GS +IA+ +GGT++ +RP T +SD V+ Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP--------TTISDPVY 289
>DHA1_STAAM (P63478) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 146 RDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSDDVF 280 R+ KS GS +IA+ +GGT++ +RP T +SD V+ Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP--------TTISDPVY 289
>DHA1_STAAC (Q5HFY4) Alanine dehydrogenase 1 (EC 1.4.1.1)| Length = 372 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = +2 Query: 146 RDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSDDVF 280 R+ KS GS +IA+ +GGT++ +RP T +SD V+ Sbjct: 253 REMVKSMKKGSVLIDIAIDQGGTIETIRP--------TTISDPVY 289
>PPCK_BRAJA (Q89BK7) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 538 Score = 28.5 bits (62), Expect = 4.5 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 12/86 (13%) Frame = +2 Query: 62 GVGAMYLYSLTLQRAT----GAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLR 229 G +Y YSL+ A GA+CA G F+GR K +T + + G + Sbjct: 29 GAPQLYQYSLSAGEAVLSADGALCADTGEFTGRSPKDKFTVRDATTDKKMWWAGNQSITA 88 Query: 230 PDPET---DRL-----RTLLSDDVFG 283 ET D L ++L + D++G Sbjct: 89 EQFETLYQDFLKHAEGKSLFAQDLYG 114
>GRDG_EUBAC (O86185) Sarcosine reductase complex component B alpha subunit (EC| 1.21.4.3) (Selenoprotein PB alpha) [Contains: Sarcosine reductase complex component B beta chain; Sarcosine reductase complex component B alpha chain] Length = 428 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = +2 Query: 101 RATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLL 265 +A V + F GRD K + A ++ + AVA G +L+ P D++ +L Sbjct: 330 QAGAKVVLITDEFPGRDGKSQSVADATPEADAVASCGQGNLIEHFPAMDKVIGML 384
>METN_HAEIN (P44785) Probable D-methionine transport ATP-binding protein metN| Length = 345 Score = 28.1 bits (61), Expect = 5.8 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +2 Query: 95 LQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSDD 274 +Q A+ ++G RD+ SN +G Q +A+AR L DP + LL D+ Sbjct: 117 IQEKITALLDLVGLSEKRDAYPSNLSGGQKQRVAIARA-----LASDP-----KVLLCDE 166 Query: 275 VFGAI 289 A+ Sbjct: 167 ATSAL 171
>SYRB_RHISN (P55361) Probable transcriptional regulator syrB| Length = 148 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +2 Query: 155 KKSNAAGSSTQEIAVARGGTLDLLRPDPETDRLRTLLSD 271 K + A +E VA DL++ D E RLR LLSD Sbjct: 94 KSAKPADRKPEESVVAGDDLADLIQLDKENLRLRNLLSD 132
>GCDA_ACIFE (Q06700) Glutaconyl-CoA decarboxylase alpha subunit (EC 4.1.1.70)| (Carboxyltransferase) Length = 587 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +2 Query: 83 YSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGT 214 + +TL++ T A V+G G D+ + + G++ EIAV G T Sbjct: 448 FEITLRKGTAAAHYVLGGPQGNDT-NAFSIGTAATEIAVMNGET 490
>HIS82_THIDA (Q3SI68) Histidinol-phosphate aminotransferase 2 (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase 2) Length = 357 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +2 Query: 164 NAAGSSTQEIAVARGGTLDLLR--PDPETDRLRTLLS 268 N G S + + RG D LR PDP +DRLR ++ Sbjct: 39 NPYGPSPRVLEALRGEVGDTLRLYPDPNSDRLRAAIA 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.305 0.131 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,789,530 Number of Sequences: 219361 Number of extensions: 197515 Number of successful extensions: 411 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 404 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits)
