>gb|U50312.2| Caenorhabditis elegans cosmid B0222, complete sequence
          Length = 40535

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     cggagatcctccagaaaata 24
             ||||||||||||||||||||
Sbjct: 21694 cggagatcctccagaaaata 21675

>emb|Z82215.1|HS68O2 Human DNA sequence from clone RP1-68O2 on chromosome 22 Contains the
            5' end of the APOL2 gene for apolipoprotein L 2, the APOL
            gene for apolipoprotein L, the MYH9 gene for nonmuscle
            type myosin heavy chain 9. ESTs, STSs and GSSs, complete
            sequence
          Length = 139389

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 5    cggagatcctccagaaaataaacc 28
            |||| |||||||||||||||||||
Sbjct: 3903 cggaaatcctccagaaaataaacc 3926

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     agccagcccgccagcgccgtcgcc 102
              ||||||||||||||||| ||||||
Sbjct: 893140 agccagcccgccagcgcggtcgcc 893117

>gb|AE008752.1| Salmonella typhimurium LT2, section 56 of 220 of the complete genome
          Length = 20097

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    ccagcccgccagcgccgtcgccga 104
             ||||||||||||||||| ||||||
Sbjct: 17267 ccagcccgccagcgccgccgccga 17244

>gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence
          Length = 191684

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 5    cggagatcctccagaaaataaacc 28
            |||| |||||||||||||||||||
Sbjct: 3980 cggaaatcctccagaaaataaacc 3957

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 83      agcccgccagcgccgtcgccgaac 106
               ||||||||| ||||||||||||||
Sbjct: 1752669 agcccgccatcgccgtcgccgaac 1752646

>ref|NM_072972.2| Caenorhabditis elegans B0222.5 (B0222.5) mRNA, complete cds
          Length = 1519

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   cggagatcctccagaaaata 24
           ||||||||||||||||||||
Sbjct: 291 cggagatcctccagaaaata 310

>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 81      ccagcccgccagcgccgtcgccga 104
               ||||||||||||||||| ||||||
Sbjct: 1777010 ccagcccgccagcgccgccgccga 1777033

>gb|AC125066.5| Mus musculus BAC clone RP23-430N17 from 16, complete sequence
          Length = 197813

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ggagatcctccagaaaataa 25
             ||||||||||||||||||||
Sbjct: 93159 ggagatcctccagaaaataa 93178

>emb|AL627269.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 5/20
          Length = 254050

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 81     ccagcccgccagcgccgtcgccga 104
              ||||||||||||||||| ||||||
Sbjct: 151173 ccagcccgccagcgccgccgccga 151150

>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete
             sequence
          Length = 139771

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    ccgccagcgccgtcgccga 104
             |||||||||||||||||||
Sbjct: 93647 ccgccagcgccgtcgccga 93629

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 86       ccgccagcgccgtcgccga 104
                |||||||||||||||||||
Sbjct: 21794169 ccgccagcgccgtcgccga 21794187

>gb|AY049833.1| Galeocerdo cuvier 18S ribosomal RNA gene, complete sequence
          Length = 1780

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   ccgccagcgccgtcgccga 104
            |||||||||||||||||||
Sbjct: 1716 ccgccagcgccgtcgccga 1698

>gb|AY423558.1| Streptomyces tenebrarius AprG (aprG) and AprF (aprF) genes,
           complete cds
          Length = 2084

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 86  ccgccagcgccgtcgccga 104
           |||||||||||||||||||
Sbjct: 35  ccgccagcgccgtcgccga 53

>gb|AC146566.7| Medicago truncatula clone mth2-71p5, complete sequence
          Length = 115996

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 14    tccagaaaataaacccccacgca 36
             ||||||||| |||||||||||||
Sbjct: 18794 tccagaaaagaaacccccacgca 18772

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 87      cgccagcgccgtcgccgaa 105
               |||||||||||||||||||
Sbjct: 2362041 cgccagcgccgtcgccgaa 2362023

>emb|AL390856.9| Human DNA sequence from clone GS1-122H1 on chromosome 1q25.1-25.3
             Contains two novel genes (LOC400799) and a yippee protein
             pseudogene, complete sequence
          Length = 143714

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     agatcctccagaaaataaa 26
             |||||||||||||||||||
Sbjct: 20198 agatcctccagaaaataaa 20216

>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     gcccgccagcgccgtcgcc 102
              |||||||||||||||||||
Sbjct: 255182 gcccgccagcgccgtcgcc 255200

>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     gcccgccagcgccgtcgcc 102
              |||||||||||||||||||
Sbjct: 326869 gcccgccagcgccgtcgcc 326887

>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   gcccgccagcgccgtcgcc 102
            |||||||||||||||||||
Sbjct: 6022 gcccgccagcgccgtcgcc 6004

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 81      ccagcccgccagcgccgtcgccgaacc 107
               ||||||||||| ||||| |||||||||
Sbjct: 3350149 ccagcccgccaacgccgccgccgaacc 3350175

>gb|AF278682.2|AF278682 Raja schmidti 18S ribosomal RNA gene, complete sequence
          Length = 1780

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   ccgccagcgccgtcgccga 104
            |||||||||||||||||||
Sbjct: 1716 ccgccagcgccgtcgccga 1698

>gb|AF212180.2|AF212180 Triakis semifasciata 18S ribosomal RNA gene, complete sequence
          Length = 1777

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 86   ccgccagcgccgtcgccga 104
            |||||||||||||||||||
Sbjct: 1713 ccgccagcgccgtcgccga 1695

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 86     ccgccagcgccgtcgccgaaccg 108
              |||||||||||| ||||||||||
Sbjct: 776984 ccgccagcgccgccgccgaaccg 776962

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 86       ccgccagcgccgtcgccga 104
                |||||||||||||||||||
Sbjct: 21787198 ccgccagcgccgtcgccga 21787216

>gb|AF140555.1|AF140555 Cryphonectria parasitica phosducin (bdm-1) gene, complete cds
          Length = 2444

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 60  cactcgccccccgaaccct 78
           |||||||||||||||||||
Sbjct: 702 cactcgccccccgaaccct 720

>emb|AJ629123.1| Streptomyces sp. DSM 40477 genomic region of the apramycin biosynthesis
             cluster
          Length = 41623

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    ccgccagcgccgtcgccga 104
             |||||||||||||||||||
Sbjct: 18860 ccgccagcgccgtcgccga 18842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 790,257
Number of Sequences: 3902068
Number of extensions: 790257
Number of successful extensions: 50962
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50371
Number of HSP's gapped (non-prelim): 591
length of query: 121
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 100
effective length of database: 17,151,101,840
effective search space: 1715110184000
effective search space used: 1715110184000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)