ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT4_MOUSE (P47945) Metallothionein-4 (MT-4) (Metallothionein-IV)... 28 6.5
2SYGP1_RAT (Q9QUH6) Ras GTPase-activating protein SynGAP (Synapti... 28 8.5
3Y678_DROME (Q8T053) Hypothetical zinc finger protein CG2678 in c... 28 8.5
4SYGP1_HUMAN (Q96PV0) Ras GTPase-activating protein SynGAP (Synap... 28 8.5

>MT4_MOUSE (P47945) Metallothionein-4 (MT-4) (Metallothionein-IV) (MT-IV)|
          Length = 62

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 74  CWCGASSMSWCRTRCVTCSSPAWATFARTC 163
           C C   S   CR  C  C  P  A  AR C
Sbjct: 20  CKCTTCSCKTCRKSCCPCCPPGCAKCARGC 49



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>SYGP1_RAT (Q9QUH6) Ras GTPase-activating protein SynGAP (Synaptic|
            Ras-GTPase-activating protein 1) (Synaptic Ras-GAP 1)
            (Neuronal RasGAP) (p135 SynGAP)
          Length = 1293

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 138  HGLPSLAHVLPAHHHHRGDRGVG 206
            HG PS  H    HHHHRG    G
Sbjct: 936  HGPPSSHHHHHHHHHHRGGEPPG 958



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>Y678_DROME (Q8T053) Hypothetical zinc finger protein CG2678 in chromosome 3|
          Length = 434

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 82  RGVVNELVPYEVCDLLFSGMGYLRSHMSSQHT 177
           RG + +L   E C L+F  + YLR H    H+
Sbjct: 397 RGHMGDLFRCEFCSLVFVDVNYLRKHKKRIHS 428



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>SYGP1_HUMAN (Q96PV0) Ras GTPase-activating protein SynGAP (Synaptic|
            Ras-GTPase-activating protein 1) (Synaptic Ras-GAP 1)
            (Neuronal RasGAP)
          Length = 1328

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 138  HGLPSLAHVLPAHHHHRGDRGVG 206
            HG PS  H    HHHHRG    G
Sbjct: 936  HGPPSSHHHHHHHHHHRGGEPPG 958


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,268,829
Number of Sequences: 219361
Number of extensions: 323521
Number of successful extensions: 1045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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