ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl23g03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192679.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1461 Score = 220 bits (111), Expect = 1e-54 Identities = 187/211 (88%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||| Sbjct: 7 tcctacgacaaggccatcgagtcgtacaagagggccgtcaccacggcggcgtccctggcg 66 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| | ||| Sbjct: 67 gcgtcggcgatgctggtgcgcggcgtcgtgaacgagctggtgccgtacgaggtgcgggac 126 Query: 124 ctgctcttctccggcatgggctaccttcgctcgcacatgtcctcccagcacaccatcatc 183 ||||||||||||||| | || ||||| || |||| |||||| |||||||||| ||||| Sbjct: 127 ctgctcttctccggcgtcgggtacctgcggtcgcgcatgtcgtcccagcacatggtcatc 186 Query: 184 atagaggagaccgaggggtgggccaacaacc 214 || |||||||||||||| ||| ||||||||| Sbjct: 187 atcgaggagaccgagggctggaccaacaacc 217
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 220 bits (111), Expect = 1e-54 Identities = 187/211 (88%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||| Sbjct: 23835126 tcctacgacaaggccatcgagtcgtacaagagggccgtcaccacggcggcgtccctggcg 23835185 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| | ||| Sbjct: 23835186 gcgtcggcgatgctggtgcgcggcgtcgtgaacgagctggtgccgtacgaggtgcgggac 23835245 Query: 124 ctgctcttctccggcatgggctaccttcgctcgcacatgtcctcccagcacaccatcatc 183 ||||||||||||||| | || ||||| || |||| |||||| |||||||||| ||||| Sbjct: 23835246 ctgctcttctccggcgtcgggtacctgcggtcgcgcatgtcgtcccagcacatggtcatc 23835305 Query: 184 atagaggagaccgaggggtgggccaacaacc 214 || |||||||||||||| ||| ||||||||| Sbjct: 23835306 atcgaggagaccgagggctggaccaacaacc 23835336
>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0681B11 Length = 144091 Score = 220 bits (111), Expect = 1e-54 Identities = 187/211 (88%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||| Sbjct: 115711 tcctacgacaaggccatcgagtcgtacaagagggccgtcaccacggcggcgtccctggcg 115770 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| | ||| Sbjct: 115771 gcgtcggcgatgctggtgcgcggcgtcgtgaacgagctggtgccgtacgaggtgcgggac 115830 Query: 124 ctgctcttctccggcatgggctaccttcgctcgcacatgtcctcccagcacaccatcatc 183 ||||||||||||||| | || ||||| || |||| |||||| |||||||||| ||||| Sbjct: 115831 ctgctcttctccggcgtcgggtacctgcggtcgcgcatgtcgtcccagcacatggtcatc 115890 Query: 184 atagaggagaccgaggggtgggccaacaacc 214 || |||||||||||||| ||| ||||||||| Sbjct: 115891 atcgaggagaccgagggctggaccaacaacc 115921
>dbj|AK120157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030D19, full insert sequence Length = 1665 Score = 220 bits (111), Expect = 1e-54 Identities = 187/211 (88%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||| Sbjct: 148 tcctacgacaaggccatcgagtcgtacaagagggccgtcaccacggcggcgtccctggcg 207 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| | ||| Sbjct: 208 gcgtcggcgatgctggtgcgcggcgtcgtgaacgagctggtgccgtacgaggtgcgggac 267 Query: 124 ctgctcttctccggcatgggctaccttcgctcgcacatgtcctcccagcacaccatcatc 183 ||||||||||||||| | || ||||| || |||| |||||| |||||||||| ||||| Sbjct: 268 ctgctcttctccggcgtcgggtacctgcggtcgcgcatgtcgtcccagcacatggtcatc 327 Query: 184 atagaggagaccgaggggtgggccaacaacc 214 || |||||||||||||| ||| ||||||||| Sbjct: 328 atcgaggagaccgagggctggaccaacaacc 358
>dbj|AK110890.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-H07, full insert sequence Length = 1680 Score = 172 bits (87), Expect = 3e-40 Identities = 124/135 (91%), Gaps = 1/135 (0%) Strand = Plus / Minus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||| Sbjct: 1479 tcctacgacaaggccatcgagtcgtacaagagggccgtcaccacggcggcgtccctggcg 1420 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| |||||||||||||| |||||||| || ||||||||||||||||||||| | ||| Sbjct: 1419 gcgtcggcgatgctggtgcgcggcgtcgtgaacgagctggtgccgtacgaggtgcgggac 1360 Query: 124 ctgctcttctccggc 138 ||||||||||||||| Sbjct: 1359 ctgctcttctccggc 1345
>ref|XM_475996.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 93.7 bits (47), Expect = 2e-16 Identities = 171/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Plus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| ||||| ||||||||||| |||| || || || ||| | || Sbjct: 7 tcctacgacaaggccatcgagtcatacaagaaggccatcacaaccgctgcatccgttgca 66 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| | ||||||||| || ||||||| || |||||||| || ||||||||| |||| Sbjct: 67 gcgtctgtgatgctggtccgcagcgtcgtgaacgagctggttccatacgaggtgcgtgat 126 Query: 124 ctgctcttctccggcatgggctaccttcgctcgcacatgtcctcccagcacaccatcatc 183 |||| || |||||| | |||||||| || || || || || || |||||||| |||||| Sbjct: 127 gtgctgttttccggcctcggctacctgcgttcacaaatttcatctcagcacacaatcatc 186 Query: 184 atagaggagaccgaggggtgggccaacaacc 214 || |||||||| ||||| ||| || |||||| Sbjct: 187 atcgaggagactgagggctggtcccacaacc 217
>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04, complete sequence Length = 100800 Score = 93.7 bits (47), Expect = 2e-16 Identities = 171/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| ||||| ||||||||||| |||| || || || ||| | || Sbjct: 39432 tcctacgacaaggccatcgagtcatacaagaaggccatcacaaccgctgcatccgttgca 39373 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| | ||||||||| || ||||||| || |||||||| || ||||||||| |||| Sbjct: 39372 gcgtctgtgatgctggtccgcagcgtcgtgaacgagctggttccatacgaggtgcgtgat 39313 Query: 124 ctgctcttctccggcatgggctaccttcgctcgcacatgtcctcccagcacaccatcatc 183 |||| || |||||| | |||||||| || || || || || || |||||||| |||||| Sbjct: 39312 gtgctgttttccggcctcggctacctgcgttcacaaatttcatctcagcacacaatcatc 39253 Query: 184 atagaggagaccgaggggtgggccaacaacc 214 || |||||||| ||||| ||| || |||||| Sbjct: 39252 atcgaggagactgagggctggtcccacaacc 39222
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 93.7 bits (47), Expect = 2e-16 Identities = 171/211 (81%), Gaps = 1/211 (0%) Strand = Plus / Minus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| ||||| ||||||||||| |||| || || || ||| | || Sbjct: 29113208 tcctacgacaaggccatcgagtcatacaagaaggccatcacaaccgctgcatccgttgca 29113149 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| | ||||||||| || ||||||| || |||||||| || ||||||||| |||| Sbjct: 29113148 gcgtctgtgatgctggtccgcagcgtcgtgaacgagctggttccatacgaggtgcgtgat 29113089 Query: 124 ctgctcttctccggcatgggctaccttcgctcgcacatgtcctcccagcacaccatcatc 183 |||| || |||||| | |||||||| || || || || || || |||||||| |||||| Sbjct: 29113088 gtgctgttttccggcctcggctacctgcgttcacaaatttcatctcagcacacaatcatc 29113029 Query: 184 atagaggagaccgaggggtgggccaacaacc 214 || |||||||| ||||| ||| || |||||| Sbjct: 29113028 atcgaggagactgagggctggtcccacaacc 29112998
>dbj|AK073047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033009G15, full insert sequence Length = 2835 Score = 69.9 bits (35), Expect = 3e-09 Identities = 120/147 (81%), Gaps = 1/147 (0%) Strand = Plus / Minus Query: 5 tcctacgacaaggccatggagtcg-acaagaaggccgtcaccacggcggcctccctcgcg 63 ||||||||||||||||| ||||| ||||||||||| |||| || || || ||| | || Sbjct: 2150 tcctacgacaaggccatcgagtcatacaagaaggccatcacaaccgctgcatccgttgca 2091 Query: 64 gcgtccgcgatgctggtgcggggcgtcgtcaatgagctggtgccgtacgaggtgtgtgac 123 ||||| | ||||||||| || ||||||| || |||||||| || ||||||||| |||| Sbjct: 2090 gcgtctgtgatgctggtccgcagcgtcgtgaacgagctggttccatacgaggtgcgtgat 2031 Query: 124 ctgctcttctccggcatgggctacctt 150 |||| || |||||| | ||||||||| Sbjct: 2030 gtgctgttttccggcctcggctacctt 2004
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcctcctacgacaaggcca 20 |||||||||||||||||||| Sbjct: 181182 ggcctcctacgacaaggcca 181163
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ggcctcctacgacaaggcca 20 |||||||||||||||||||| Sbjct: 179938 ggcctcctacgacaaggcca 179919 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,367,783 Number of Sequences: 3902068 Number of extensions: 1367783 Number of successful extensions: 85616 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85481 Number of HSP's gapped (non-prelim): 126 length of query: 214 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 192 effective length of database: 17,147,199,772 effective search space: 3292262356224 effective search space used: 3292262356224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
