ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_363889.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 1.1
2gb|AC008975.3| Homo sapiens chromosome 19 clone LLNL-F_138H2, co... 38 1.1
3emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in l... 38 1.1
4gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, ... 36 4.2
5gb|AC122922.4| Mus musculus BAC clone RP23-34M5 from chromosome ... 36 4.2
6emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chr... 36 4.2
7emb|AL591398.2| Human DNA sequence from clone RP11-81C12 on chro... 36 4.2
8emb|AL590648.9| Human DNA sequence from clone RP11-338C15 on chr... 36 4.2
9gb|AC103890.1| 16q24.3 clone, complete sequence 36 4.2
10gb|U53466.2|U53466 Cydia pomonella granulovirus, complete genome 36 4.2
11gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, compl... 36 4.2
12emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in ... 36 4.2
13gb|AC153522.4| Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer... 36 4.2
14emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chro... 36 4.2
15gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 36 4.2
16gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, compl... 36 4.2

>ref|XM_363889.1| Magnaporthe grisea 70-15 hypothetical protein (MG01815.4) partial
           mRNA
          Length = 2766

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 14  cacctcctttaccagcttt 32
           |||||||||||||||||||
Sbjct: 292 cacctcctttaccagcttt 310



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>gb|AC008975.3| Homo sapiens chromosome 19 clone LLNL-F_138H2, complete sequence
          Length = 39577

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     cacctgaccacccacctcc 20
             |||||||||||||||||||
Sbjct: 22988 cacctgaccacccacctcc 22970



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>emb|BX088566.6| Zebrafish DNA sequence from clone DKEY-63E5 in linkage group 6,
             complete sequence
          Length = 195778

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ctgaccacccacctccttt 23
             |||||||||||||||||||
Sbjct: 63392 ctgaccacccacctccttt 63374



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>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     cctttaccagctttgccg 36
              ||||||||||||||||||
Sbjct: 444178 cctttaccagctttgccg 444195



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>gb|AC122922.4| Mus musculus BAC clone RP23-34M5 from chromosome 1, complete sequence
          Length = 223959

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      gaccacccacctccttta 24
              ||||||||||||||||||
Sbjct: 102768 gaccacccacctccttta 102751



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>emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chromosome 7, complete
              sequence
          Length = 185507

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      cctgaccacccacctcct 21
              ||||||||||||||||||
Sbjct: 140731 cctgaccacccacctcct 140748



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>emb|AL591398.2| Human DNA sequence from clone RP11-81C12 on chromosome X Contains a
             pseudogene similar to part of mothers against
             decapentaplegic (MAD) homolog (Drosophila) interacting
             protein receptor activation anchor (MADHIP), complete
             sequence
          Length = 89973

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 8     accacccacctcctttac 25
             ||||||||||||||||||
Sbjct: 45930 accacccacctcctttac 45947



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>emb|AL590648.9| Human DNA sequence from clone RP11-338C15 on chromosome 1 Contains the
             3' end of the ATF3 gene for activating transcription
             factor 3, three novel genes (FLJ32796) (FLJ40118) and a
             riboflavin kinase pseudogene, complete sequence
          Length = 65096

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     acctgaccacccacctcc 20
             ||||||||||||||||||
Sbjct: 43711 acctgaccacccacctcc 43694



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>gb|AC103890.1| 16q24.3 clone, complete sequence
          Length = 129848

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     cctgaccacccacctcct 21
             ||||||||||||||||||
Sbjct: 72120 cctgaccacccacctcct 72103



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>gb|U53466.2|U53466 Cydia pomonella granulovirus, complete genome
          Length = 123500

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      ccacctgaccacccacct 18
              ||||||||||||||||||
Sbjct: 113714 ccacctgaccacccacct 113731



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>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence
          Length = 129785

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     cctgaccacccacctcct 21
             ||||||||||||||||||
Sbjct: 57784 cctgaccacccacctcct 57801



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>emb|BX004839.9| Zebrafish DNA sequence from clone DKEY-18A23 in linkage group 6, complete
              sequence
          Length = 223000

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 5      ctgaccacccacctcctt 22
              ||||||||||||||||||
Sbjct: 173926 ctgaccacccacctcctt 173909



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>gb|AC153522.4| Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 238562

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     acctgaccacccacctcc 20
             ||||||||||||||||||
Sbjct: 40044 acctgaccacccacctcc 40061



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>emb|AL451077.9| Human DNA sequence from clone RP11-305A3 on chromosome 1, complete
              sequence
          Length = 173609

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      acctgaccacccacctcc 20
              ||||||||||||||||||
Sbjct: 170976 acctgaccacccacctcc 170993



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 3       acctgaccacccacctcc 20
               ||||||||||||||||||
Sbjct: 1621281 acctgaccacccacctcc 1621264



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>gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, complete sequence
          Length = 178210

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 3     acctgaccacccacctcc 20
             ||||||||||||||||||
Sbjct: 44693 acctgaccacccacctcc 44676


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 343,086
Number of Sequences: 3902068
Number of extensions: 343086
Number of successful extensions: 74284
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74223
Number of HSP's gapped (non-prelim): 61
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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