ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CEA_CITFR (P04480) Colicin-A 29 3.1
2IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 28 5.2
3BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing... 28 9.0

>CEA_CITFR (P04480) Colicin-A|
          Length = 592

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 122 TGWSVVMAEGPEPDQGTAAARSTGNRRGAGEEIAEES 12
           TGWS     GPEP  G +   S G+ RG    +  ES
Sbjct: 13  TGWSSERGSGPEPG-GGSHGNSGGHDRGDSSNVGNES 48



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>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +1

Query: 103 MTTDQPVISLRPXXXXXXP 159
           MTTDQPVISLRP      P
Sbjct: 1   MTTDQPVISLRPGGGGGGP 19



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>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
           (WD-repeat protein 9)
          Length = 2320

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 51  PCRSSCRGALVGFGTLSHDDRPASDQPAPWRRRRR 155
           P R+SCR  +  F + S D+    +   P RRR+R
Sbjct: 879 PLRTSCRRRITRFCSSSEDEISTENLSPPKRRRKR 913


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.131    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,442,883
Number of Sequences: 219361
Number of extensions: 269307
Number of successful extensions: 1150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 80,573,946
effective HSP length: 29
effective length of database: 74,212,477
effective search space used: 1781099448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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