ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK129661.1| Homo sapiens cDNA FLJ26150 fis, clone ADG00494 42 0.18
2emb|AL163193.5|HS73E6 Homo sapiens chromosome 9 BAC RP11-73E6, c... 42 0.18
3gb|AC132144.3| Mus musculus BAC clone RP23-39L19 from chromosome... 40 0.69
4emb|AL445489.10| Human DNA sequence from clone RP11-230L22 on ch... 40 0.69
5gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, comple... 40 0.69
6emb|AL805959.11| Mouse DNA sequence from clone RP23-391H10 on ch... 40 0.69
7gb|DQ213530.1| Taeniopygia guttata clone 0058P0012H02 nuclear re... 38 2.7
8gb|AC165329.8| Mus musculus chromosome 3, clone wi1-298L18, comp... 38 2.7
9ref|XM_612041.2| PREDICTED: Bos taurus similar to delta/notch-li... 38 2.7
10gb|AC136455.3| Mus musculus BAC clone RP24-481H2 from chromosome... 38 2.7
11gb|AC079855.8| Homo sapiens BAC clone RP11-332L16 from 7, comple... 38 2.7
12emb|CT009769.4| Mouse DNA sequence from clone RP23-44C21 on chro... 38 2.7
13gb|AC123855.4| Mus musculus BAC clone RP23-328J17 from chromosom... 38 2.7
14gb|AC118224.8| Mus musculus chromosome 10, clone RP23-341N20, co... 38 2.7
15gb|AC153539.7| Mus musculus 10 BAC RP23-245C19 (Roswell Park Can... 38 2.7
16gb|AC158682.8| Mus musculus 6 BAC RP23-342D13 (Roswell Park Canc... 38 2.7
17gb|AC017099.11| Homo sapiens BAC clone RP11-542D13 from 2, compl... 38 2.7
18gb|AC013272.5| Homo sapiens BAC clone RP11-401C13 from 2, comple... 38 2.7
19gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, comple... 38 2.7
20gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, comple... 38 2.7
21gb|AC148026.2| Homo sapiens BAC clone RP11-625I24 from 2, comple... 38 2.7
22gb|AC162806.4| Mus musculus BAC clone RP23-95E13 from chromosome... 38 2.7
23gb|AC140363.3| Mus musculus BAC clone RP23-212M11 from 9, comple... 38 2.7
24gb|AC157571.6| Mus musculus BAC clone RP23-111F7 from chromosome... 38 2.7
25emb|AL365326.14| Mouse DNA sequence from clone RP23-381K21 on ch... 38 2.7

>dbj|AK129661.1| Homo sapiens cDNA FLJ26150 fis, clone ADG00494
          Length = 1815

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 33  ttcaaaacaaacttcgccaaacttc 57
           |||||||||||||| ||||||||||
Sbjct: 974 ttcaaaacaaacttggccaaacttc 998



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>emb|AL163193.5|HS73E6 Homo sapiens chromosome 9 BAC RP11-73E6, complete sequence
          Length = 175931

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 33    ttcaaaacaaacttcgccaaacttc 57
             |||||||||||||| ||||||||||
Sbjct: 83866 ttcaaaacaaacttggccaaacttc 83842



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>gb|AC132144.3| Mus musculus BAC clone RP23-39L19 from chromosome 2, complete sequence
          Length = 233042

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     catcatgtactttctgctct 20
             ||||||||||||||||||||
Sbjct: 84897 catcatgtactttctgctct 84878



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>emb|AL445489.10| Human DNA sequence from clone RP11-230L22 on chromosome 9 Contains the 3'
              end of a gene for a novel delta-notch like protein
              (FLJ38464), the 5' end of the gene for a novel protein
              (KIAA1608), a novel gene and two CpG islands, complete
              sequence
          Length = 175869

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      catcatgtactttctgctct 20
              ||||||||||||||||||||
Sbjct: 147358 catcatgtactttctgctct 147377



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>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence
          Length = 173808

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     atctctgtcttcaaaacaaa 43
              ||||||||||||||||||||
Sbjct: 121738 atctctgtcttcaaaacaaa 121757



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>emb|AL805959.11| Mouse DNA sequence from clone RP23-391H10 on chromosome 2, complete
              sequence
          Length = 217595

 Score = 40.1 bits (20), Expect = 0.69
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      catcatgtactttctgctct 20
              ||||||||||||||||||||
Sbjct: 198739 catcatgtactttctgctct 198758



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>gb|DQ213530.1| Taeniopygia guttata clone 0058P0012H02 nuclear receptor subfamily
          2 group F member 2-like mRNA, complete sequence
          Length = 1369

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 48 gccaaacttcctcttcccccttt 70
          |||||||||||| ||||||||||
Sbjct: 90 gccaaacttcctgttcccccttt 68



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>gb|AC165329.8| Mus musculus chromosome 3, clone wi1-298L18, complete sequence
          Length = 40686

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ctctgtcttcaaaacaaac 44
             |||||||||||||||||||
Sbjct: 27441 ctctgtcttcaaaacaaac 27423



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>ref|XM_612041.2| PREDICTED: Bos taurus similar to delta/notch-like EGF-related
           receptor (LOC540552), mRNA
          Length = 1667

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 3   tcatgtactttctgctctc 21
           |||||||||||||||||||
Sbjct: 960 tcatgtactttctgctctc 978



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>gb|AC136455.3| Mus musculus BAC clone RP24-481H2 from chromosome 6, complete
            sequence
          Length = 166458

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    catcatgtactttctgctc 19
            |||||||||||||||||||
Sbjct: 1209 catcatgtactttctgctc 1191



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>gb|AC079855.8| Homo sapiens BAC clone RP11-332L16 from 7, complete sequence
          Length = 143146

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     ctctgtcttcaaaacaaac 44
              |||||||||||||||||||
Sbjct: 117983 ctctgtcttcaaaacaaac 118001



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>emb|CT009769.4| Mouse DNA sequence from clone RP23-44C21 on chromosome 9, complete
             sequence
          Length = 197074

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    caaacttcctcttccccct 68
             |||||||||||||||||||
Sbjct: 67771 caaacttcctcttccccct 67753



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>gb|AC123855.4| Mus musculus BAC clone RP23-328J17 from chromosome 12, complete
             sequence
          Length = 205684

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    caaaacaaacttcgccaaa 53
             |||||||||||||||||||
Sbjct: 29773 caaaacaaacttcgccaaa 29791



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>gb|AC118224.8| Mus musculus chromosome 10, clone RP23-341N20, complete sequence
          Length = 205533

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 27   tctgtcttcaaaacaaact 45
            |||||||||||||||||||
Sbjct: 6358 tctgtcttcaaaacaaact 6376



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>gb|AC153539.7| Mus musculus 10 BAC RP23-245C19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 230854

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    tctgtcttcaaaacaaact 45
             |||||||||||||||||||
Sbjct: 36350 tctgtcttcaaaacaaact 36332



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>gb|AC158682.8| Mus musculus 6 BAC RP23-342D13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214029

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      catcatgtactttctgctc 19
              |||||||||||||||||||
Sbjct: 129294 catcatgtactttctgctc 129276



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>gb|AC017099.11| Homo sapiens BAC clone RP11-542D13 from 2, complete sequence
          Length = 230426

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    tctctgtcttcaaaacaaa 43
             |||||||||||||||||||
Sbjct: 95841 tctctgtcttcaaaacaaa 95859



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>gb|AC013272.5| Homo sapiens BAC clone RP11-401C13 from 2, complete sequence
          Length = 172705

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 25     tctctgtcttcaaaacaaa 43
              |||||||||||||||||||
Sbjct: 115528 tctctgtcttcaaaacaaa 115510



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>gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, complete sequence
          Length = 191055

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    tctctgtcttcaaaacaaa 43
             |||||||||||||||||||
Sbjct: 92701 tctctgtcttcaaaacaaa 92683



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>gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, complete sequence
          Length = 202084

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    tctctgtcttcaaaacaaa 43
             |||||||||||||||||||
Sbjct: 36177 tctctgtcttcaaaacaaa 36159



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>gb|AC148026.2| Homo sapiens BAC clone RP11-625I24 from 2, complete sequence
          Length = 159856

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    tctctgtcttcaaaacaaa 43
             |||||||||||||||||||
Sbjct: 63182 tctctgtcttcaaaacaaa 63164



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>gb|AC162806.4| Mus musculus BAC clone RP23-95E13 from chromosome 9, complete sequence
          Length = 165949

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    ctgtcttcaaaacaaactt 46
             |||||||||||||||||||
Sbjct: 18781 ctgtcttcaaaacaaactt 18799



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>gb|AC140363.3| Mus musculus BAC clone RP23-212M11 from 9, complete sequence
          Length = 217832

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    ctgtcttcaaaacaaactt 46
             |||||||||||||||||||
Sbjct: 41812 ctgtcttcaaaacaaactt 41794



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>gb|AC157571.6| Mus musculus BAC clone RP23-111F7 from chromosome 12, complete sequence
          Length = 208117

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     caaaacaaacttcgccaaa 53
              |||||||||||||||||||
Sbjct: 197051 caaaacaaacttcgccaaa 197069



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>emb|AL365326.14| Mouse DNA sequence from clone RP23-381K21 on chromosome 1, complete
             sequence
          Length = 189860

 Score = 38.2 bits (19), Expect = 2.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    tctgtcttcaaaacaaact 45
             |||||||||||||||||||
Sbjct: 75809 tctgtcttcaaaacaaact 75791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 893,939
Number of Sequences: 3902068
Number of extensions: 893939
Number of successful extensions: 65681
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65627
Number of HSP's gapped (non-prelim): 54
length of query: 70
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 49
effective length of database: 17,151,101,840
effective search space: 840403990160
effective search space used: 840403990160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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