ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL590733.8| Human DNA sequence from clone RP11-193D23 on chr... 38 1.2
2emb|BX927361.31| Zebrafish DNA sequence from clone CH211-121K8 i... 38 1.2
3gb|AC150430.3| Branchiostoma floridae clone CH302-99K22, complet... 36 4.6
4emb|AL590082.9| Human DNA sequence from clone RP11-252E11 on chr... 36 4.6
5gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 ma... 36 4.6
6emb|BX323811.14| Zebrafish DNA sequence from clone DKEY-234H16 i... 36 4.6
7emb|BX547941.7| Zebrafish DNA sequence from clone RP71-1C23 in l... 36 4.6
8gb|AY135690.1| Mus musculus argonaute 4 protein (Ago4) gene, com... 36 4.6
9gb|AY135687.1| Mus musculus argonaute 1 protein (Ago1) gene, par... 36 4.6
10dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 36 4.6
11gb|AC154401.2| Mus musculus BAC clone RP23-166O7 from 13, comple... 36 4.6
12emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chr... 36 4.6

>emb|AL590733.8| Human DNA sequence from clone RP11-193D23 on chromosome 6 Contains the
             3' end of the FLJ14440 gene for thrombospondin, complete
             sequence
          Length = 135507

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aaatttagtgatttctgta 19
             |||||||||||||||||||
Sbjct: 54497 aaatttagtgatttctgta 54479



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>emb|BX927361.31| Zebrafish DNA sequence from clone CH211-121K8 in linkage group 9,
             complete sequence
          Length = 177986

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     ttagtgatttctgtacgtg 23
             |||||||||||||||||||
Sbjct: 10109 ttagtgatttctgtacgtg 10127



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>gb|AC150430.3| Branchiostoma floridae clone CH302-99K22, complete sequence
          Length = 131908

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     aaatttagtgatttctgt 18
             ||||||||||||||||||
Sbjct: 91756 aaatttagtgatttctgt 91773



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>emb|AL590082.9| Human DNA sequence from clone RP11-252E11 on chromosome 1, complete
             sequence
          Length = 117032

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     aatttagtgatttctgta 19
             ||||||||||||||||||
Sbjct: 39485 aatttagtgatttctgta 39502



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>gb|AC093318.52| Mus musculus strain C57BL/6J clone rp23-252h7 map 1, complete sequence
          Length = 198381

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 20    cgtggttgatccattcca 37
             ||||||||||||||||||
Sbjct: 90429 cgtggttgatccattcca 90412



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>emb|BX323811.14| Zebrafish DNA sequence from clone DKEY-234H16 in linkage group 5,
              complete sequence
          Length = 204094

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 24     gttgatccattccacagg 41
              ||||||||||||||||||
Sbjct: 203654 gttgatccattccacagg 203637



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>emb|BX547941.7| Zebrafish DNA sequence from clone RP71-1C23 in linkage group 5,
            complete sequence
          Length = 137259

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 24   gttgatccattccacagg 41
            ||||||||||||||||||
Sbjct: 1560 gttgatccattccacagg 1543



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>gb|AY135690.1| Mus musculus argonaute 4 protein (Ago4) gene, complete cds
          Length = 92047

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     aatttagtgatttctgta 19
             ||||||||||||||||||
Sbjct: 88183 aatttagtgatttctgta 88200



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>gb|AY135687.1| Mus musculus argonaute 1 protein (Ago1) gene, partial cds
          Length = 64211

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 2    aatttagtgatttctgta 19
            ||||||||||||||||||
Sbjct: 4312 aatttagtgatttctgta 4329



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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      aaatttagtgatttctgt 18
              ||||||||||||||||||
Sbjct: 251598 aaatttagtgatttctgt 251615



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>gb|AC154401.2| Mus musculus BAC clone RP23-166O7 from 13, complete sequence
          Length = 199694

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 10    gatttctgtacgtggttg 27
             ||||||||||||||||||
Sbjct: 71290 gatttctgtacgtggttg 71273



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>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete
             sequence
          Length = 213391

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 2     aatttagtgatttctgta 19
             ||||||||||||||||||
Sbjct: 30095 aatttagtgatttctgta 30078


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 275,621
Number of Sequences: 3902068
Number of extensions: 275621
Number of successful extensions: 74053
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74027
Number of HSP's gapped (non-prelim): 26
length of query: 41
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 21
effective length of database: 17,155,003,908
effective search space: 360255082068
effective search space used: 360255082068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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