ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POT2_ARATH (O22881) Potassium transporter 2 (AtPOT2) (AtKUP2) (A... 40 0.002
2HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8) 38 0.009
3HAK9_ORYSA (Q7XIV8) Probable potassium transporter 9 (OsHAK9) 37 0.020
4HAK13_ORYSA (Q652J4) Probable potassium transporter 13 (OsHAK13) 32 0.38
5POT8_ARATH (Q9M7J9) Potassium transporter 8 (AtPOT8) (AtHAK8) 32 0.50
6POT6_ARATH (Q8W4I4) Potassium transporter 6 (AtPOT6) (AtHAK6) 31 0.86

>POT2_ARATH (O22881) Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2)|
          Length = 794

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 20/33 (60%), Positives = 23/33 (69%)
 Frame = +1

Query: 1  MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 99
          MDL L    G+   + ESW +VLLLAYQSLGVV
Sbjct: 1  MDLNLGKCCGSRSSKKESWRSVLLLAYQSLGVV 33



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>HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8)|
          Length = 793

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 1  MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 99
          MDLE   G  +P++  +SW   LLLAYQSLGVV
Sbjct: 1  MDLEFGRGMRSPQR--DSWKTTLLLAYQSLGVV 31



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>HAK9_ORYSA (Q7XIV8) Probable potassium transporter 9 (OsHAK9)|
          Length = 788

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 22/33 (66%), Positives = 22/33 (66%)
 Frame = +1

Query: 1  MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 99
          MD E   G  APRKR E W   LLLAYQSLGVV
Sbjct: 1  MDPEFGRGM-APRKR-EPWRTTLLLAYQSLGVV 31



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>HAK13_ORYSA (Q652J4) Probable potassium transporter 13 (OsHAK13)|
          Length = 778

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = +1

Query: 22 GAGAPRKRGESWG---AVLLLAYQSLGVV 99
          G GAP +   SWG     LLLAYQS GVV
Sbjct: 10 GGGAPPRGRNSWGWQKGTLLLAYQSFGVV 38



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>POT8_ARATH (Q9M7J9) Potassium transporter 8 (AtPOT8) (AtHAK8)|
          Length = 781

 Score = 32.0 bits (71), Expect = 0.50
 Identities = 19/33 (57%), Positives = 20/33 (60%)
 Frame = +1

Query: 1  MDLELAHGAGAPRKRGESWGAVLLLAYQSLGVV 99
          MDLE        +K  ESW  VL LAYQSLGVV
Sbjct: 1  MDLERLSPRNPVKK--ESWWTVLTLAYQSLGVV 31



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>POT6_ARATH (Q8W4I4) Potassium transporter 6 (AtPOT6) (AtHAK6)|
          Length = 782

 Score = 31.2 bits (69), Expect = 0.86
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +1

Query: 7  LELAHGAGAPRKRGESWGAVLLLAYQSLGVV 99
          +E+  G+    K+ ESW  VL LAYQSLGVV
Sbjct: 1  MEIESGSYQNAKK-ESWRTVLTLAYQSLGVV 30


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,150,236
Number of Sequences: 219361
Number of extensions: 85427
Number of successful extensions: 336
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 80,573,946
effective HSP length: 9
effective length of database: 78,599,697
effective search space used: 1886392728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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