ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromo... 40 1.7
2dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 1.7
3ref|XM_514522.1| PREDICTED: Pan troglodytes similar to chromosom... 38 6.7
4ref|NM_024704.3| Homo sapiens chromosome 20 open reading frame 2... 38 6.7
5ref|XM_610788.2| PREDICTED: Bos taurus similar to kinesin-like m... 38 6.7
6gb|BC050577.1| Homo sapiens chromosome 20 open reading frame 23,... 38 6.7
7gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome... 38 6.7
8emb|AL117376.28|HSDJ971B4 Human DNA sequence from clone RP5-971B... 38 6.7
9emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section... 38 6.7
10emb|X56049.1|BSFLAAO B. subtilis FlaA locus operon 38 6.7
11emb|BX648426.1|HSM808574 Homo sapiens mRNA; cDNA DKFZp686A11253 ... 38 6.7
12emb|BX647572.1|HSM807718 Homo sapiens mRNA; cDNA DKFZp313B0719 (... 38 6.7
13gb|AC080003.6| Homo sapiens BAC clone RP11-344F9 from 4, complet... 38 6.7
14gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, co... 38 6.7
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.7
16gb|AY166853.1| Homo sapiens kinesin motor protein mRNA, complete... 38 6.7
17dbj|AK000142.1| Homo sapiens cDNA FLJ20135 fis, clone COL06818 38 6.7
18dbj|AK129732.1| Homo sapiens cDNA FLJ26221 fis, clone ADG08311 38 6.7
19gb|AC006071.1|AC006071 Homo sapiens chromosome 17, clone hCIT.12... 38 6.7
20dbj|AB046810.2| Homo sapiens mRNA for KIAA1590 protein, partial cds 38 6.7
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.7
22emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb... 38 6.7

>gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromosome unknown, complete
              sequence
          Length = 207834

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    aggaggagagcctcggaggg 140
              ||||||||||||||||||||
Sbjct: 164981 aggaggagagcctcggaggg 165000



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 109     ccctgtacaagcaggaggag 128
               ||||||||||||||||||||
Sbjct: 2640606 ccctgtacaagcaggaggag 2640625



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>ref|XM_514522.1| PREDICTED: Pan troglodytes similar to chromosome 20 open reading
            frame 23; sorting nexin 23; kinesin motor protein
            (LOC458104), mRNA
          Length = 6271

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 2605 caagcaggaggagagcctc 2623



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>ref|NM_024704.3| Homo sapiens chromosome 20 open reading frame 23 (C20orf23), mRNA
          Length = 5274

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 2114 caagcaggaggagagcctc 2132



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>ref|XM_610788.2| PREDICTED: Bos taurus similar to kinesin-like motor protein C20orf23
            (LOC532276), mRNA
          Length = 4111

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 1761 caagcaggaggagagcctc 1779



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>gb|BC050577.1| Homo sapiens chromosome 20 open reading frame 23, mRNA (cDNA clone
            IMAGE:5755129), complete cds
          Length = 5161

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 2115 caagcaggaggagagcctc 2133



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>gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome 18, complete sequence
          Length = 222376

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 106    tcaccctgtacaagcaggaggag 128
              ||||| |||||||||||||||||
Sbjct: 108729 tcaccatgtacaagcaggaggag 108751



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>emb|AL117376.28|HSDJ971B4 Human DNA sequence from clone RP5-971B4 on chromosome 20 Contains the 3'
              end of the C20orf23 gene for a novel protein similar to
              KIF1 type and other kinesin-like proteins, complete
              sequence
          Length = 162213

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 116    caagcaggaggagagcctc 134
              |||||||||||||||||||
Sbjct: 138433 caagcaggaggagagcctc 138415



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>emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section 9 of 21): from 1602883 to
             1807145
          Length = 204263

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 112   tgtacaagcaggaggagagcctc 134
             |||||||||||||||| ||||||
Sbjct: 92029 tgtacaagcaggaggaaagcctc 92007



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>emb|X56049.1|BSFLAAO B. subtilis FlaA locus operon
          Length = 8302

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 112  tgtacaagcaggaggagagcctc 134
            |||||||||||||||| ||||||
Sbjct: 2056 tgtacaagcaggaggaaagcctc 2034



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>emb|BX648426.1|HSM808574 Homo sapiens mRNA; cDNA DKFZp686A11253 (from clone DKFZp686A11253)
          Length = 3023

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 116 caagcaggaggagagcctc 134
           |||||||||||||||||||
Sbjct: 288 caagcaggaggagagcctc 306



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>emb|BX647572.1|HSM807718 Homo sapiens mRNA; cDNA DKFZp313B0719 (from clone DKFZp313B0719)
          Length = 5215

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 2034 caagcaggaggagagcctc 2052



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>gb|AC080003.6| Homo sapiens BAC clone RP11-344F9 from 4, complete sequence
          Length = 187936

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    aggatgagggtggcggtgg 33
             |||||||||||||||||||
Sbjct: 37510 aggatgagggtggcggtgg 37528



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>gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, complete sequence
          Length = 143557

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     agacgttgagcaggatgag 22
             |||||||||||||||||||
Sbjct: 66323 agacgttgagcaggatgag 66341



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 15      aggatgagggtggcggtgg 33
               |||||||||||||||||||
Sbjct: 9528048 aggatgagggtggcggtgg 9528066



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>gb|AY166853.1| Homo sapiens kinesin motor protein mRNA, complete cds
          Length = 5282

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 2114 caagcaggaggagagcctc 2132



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>dbj|AK000142.1| Homo sapiens cDNA FLJ20135 fis, clone COL06818
          Length = 2260

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 1357 caagcaggaggagagcctc 1375



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>dbj|AK129732.1| Homo sapiens cDNA FLJ26221 fis, clone ADG08311
          Length = 1722

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    agacgttgagcaggatgag 22
            |||||||||||||||||||
Sbjct: 1361 agacgttgagcaggatgag 1379



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>gb|AC006071.1|AC006071 Homo sapiens chromosome 17, clone hCIT.124_H_2, complete sequence
          Length = 93713

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 122   ggaggagagcctcggaggg 140
             |||||||||||||||||||
Sbjct: 86181 ggaggagagcctcggaggg 86199



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>dbj|AB046810.2| Homo sapiens mRNA for KIAA1590 protein, partial cds
          Length = 4558

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  caagcaggaggagagcctc 134
            |||||||||||||||||||
Sbjct: 2032 caagcaggaggagagcctc 2050



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 15      aggatgagggtggcggtgg 33
               |||||||||||||||||||
Sbjct: 9527933 aggatgagggtggcggtgg 9527951



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>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 123766

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     aggatgagggtggcggtgg 33
              |||||||||||||||||||
Sbjct: 113272 aggatgagggtggcggtgg 113290


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 548,527
Number of Sequences: 3902068
Number of extensions: 548527
Number of successful extensions: 37128
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37072
Number of HSP's gapped (non-prelim): 56
length of query: 140
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 119
effective length of database: 17,151,101,840
effective search space: 2040981118960
effective search space used: 2040981118960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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