Clone Name | bastl23d12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromosome unknown, complete sequence Length = 207834 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aggaggagagcctcggaggg 140 |||||||||||||||||||| Sbjct: 164981 aggaggagagcctcggaggg 165000
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ccctgtacaagcaggaggag 128 |||||||||||||||||||| Sbjct: 2640606 ccctgtacaagcaggaggag 2640625
>ref|XM_514522.1| PREDICTED: Pan troglodytes similar to chromosome 20 open reading frame 23; sorting nexin 23; kinesin motor protein (LOC458104), mRNA Length = 6271 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 2605 caagcaggaggagagcctc 2623
>ref|NM_024704.3| Homo sapiens chromosome 20 open reading frame 23 (C20orf23), mRNA Length = 5274 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 2114 caagcaggaggagagcctc 2132
>ref|XM_610788.2| PREDICTED: Bos taurus similar to kinesin-like motor protein C20orf23 (LOC532276), mRNA Length = 4111 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 1761 caagcaggaggagagcctc 1779
>gb|BC050577.1| Homo sapiens chromosome 20 open reading frame 23, mRNA (cDNA clone IMAGE:5755129), complete cds Length = 5161 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 2115 caagcaggaggagagcctc 2133
>gb|AC124518.4| Mus musculus BAC clone RP23-392E7 from chromosome 18, complete sequence Length = 222376 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 106 tcaccctgtacaagcaggaggag 128 ||||| ||||||||||||||||| Sbjct: 108729 tcaccatgtacaagcaggaggag 108751
>emb|AL117376.28|HSDJ971B4 Human DNA sequence from clone RP5-971B4 on chromosome 20 Contains the 3' end of the C20orf23 gene for a novel protein similar to KIF1 type and other kinesin-like proteins, complete sequence Length = 162213 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 138433 caagcaggaggagagcctc 138415
>emb|Z99112.2|BSUB0009 Bacillus subtilis complete genome (section 9 of 21): from 1602883 to 1807145 Length = 204263 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 112 tgtacaagcaggaggagagcctc 134 |||||||||||||||| |||||| Sbjct: 92029 tgtacaagcaggaggaaagcctc 92007
>emb|X56049.1|BSFLAAO B. subtilis FlaA locus operon Length = 8302 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 112 tgtacaagcaggaggagagcctc 134 |||||||||||||||| |||||| Sbjct: 2056 tgtacaagcaggaggaaagcctc 2034
>emb|BX648426.1|HSM808574 Homo sapiens mRNA; cDNA DKFZp686A11253 (from clone DKFZp686A11253) Length = 3023 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 288 caagcaggaggagagcctc 306
>emb|BX647572.1|HSM807718 Homo sapiens mRNA; cDNA DKFZp313B0719 (from clone DKFZp313B0719) Length = 5215 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 2034 caagcaggaggagagcctc 2052
>gb|AC080003.6| Homo sapiens BAC clone RP11-344F9 from 4, complete sequence Length = 187936 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aggatgagggtggcggtgg 33 ||||||||||||||||||| Sbjct: 37510 aggatgagggtggcggtgg 37528
>gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, complete sequence Length = 143557 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 agacgttgagcaggatgag 22 ||||||||||||||||||| Sbjct: 66323 agacgttgagcaggatgag 66341
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aggatgagggtggcggtgg 33 ||||||||||||||||||| Sbjct: 9528048 aggatgagggtggcggtgg 9528066
>gb|AY166853.1| Homo sapiens kinesin motor protein mRNA, complete cds Length = 5282 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 2114 caagcaggaggagagcctc 2132
>dbj|AK000142.1| Homo sapiens cDNA FLJ20135 fis, clone COL06818 Length = 2260 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 1357 caagcaggaggagagcctc 1375
>dbj|AK129732.1| Homo sapiens cDNA FLJ26221 fis, clone ADG08311 Length = 1722 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 agacgttgagcaggatgag 22 ||||||||||||||||||| Sbjct: 1361 agacgttgagcaggatgag 1379
>gb|AC006071.1|AC006071 Homo sapiens chromosome 17, clone hCIT.124_H_2, complete sequence Length = 93713 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 122 ggaggagagcctcggaggg 140 ||||||||||||||||||| Sbjct: 86181 ggaggagagcctcggaggg 86199
>dbj|AB046810.2| Homo sapiens mRNA for KIAA1590 protein, partial cds Length = 4558 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 caagcaggaggagagcctc 134 ||||||||||||||||||| Sbjct: 2032 caagcaggaggagagcctc 2050
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aggatgagggtggcggtgg 33 ||||||||||||||||||| Sbjct: 9527933 aggatgagggtggcggtgg 9527951
>emb|AL731874.4|CNS08C8E Oryza sativa chromosome 12, . BAC OSJNBb0077C18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123766 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 aggatgagggtggcggtgg 33 ||||||||||||||||||| Sbjct: 113272 aggatgagggtggcggtgg 113290 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 548,527 Number of Sequences: 3902068 Number of extensions: 548527 Number of successful extensions: 37128 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37072 Number of HSP's gapped (non-prelim): 56 length of query: 140 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 119 effective length of database: 17,151,101,840 effective search space: 2040981118960 effective search space used: 2040981118960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)