>SC5A6_DROME (P83740) Putative sodium-dependent multivitamin transporter|
           (Na(+)-dependent multivitamin transporter)
          Length = 604

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +2

Query: 44  FWF---LPRPPLLFVVASTQECVRWTNLSR*PRISARTILFCTPREYCIPLSQSLINLLV 214
           FW     P+PPL+ +  ST  C    + +R   I  +T++     E+   L +      +
Sbjct: 453 FWIGFGQPKPPLVSLDMSTAGCPVDRSFAR--DIFLKTVIAVAEEEHYFYLYR------I 504

Query: 215 IILWYSALGFCCCFYIGFAL 274
             +WY+ALGF   F+ G+ L
Sbjct: 505 SYMWYAALGFLITFFGGWLL 524

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 140  ARTILFCTPREYCIPLSQSLINLL-VIILWYSALGFCCCFYIG-FALL 277
            AR I+F     Y  PL     N L  I+L Y  LG+CCC Y G F LL
Sbjct: 3730 ARAIVFVCVEYY--PLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLL 3775

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 140  ARTILFCTPREYCIPLSQSLINLL-VIILWYSALGFCCCFYIG-FALL 277
            AR I+F     Y  PL     N L  I+L Y  LG+CCC Y G F LL
Sbjct: 3732 ARAIVFVCVEYY--PLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLL 3777

>VP30_MABVM (P35258) Minor nucleoprotein VP30|
          Length = 277

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
 Frame = -2

Query: 213 TRRLISDC-----ERGMQYSLGVQNK-IVRAEILGHLLKFVHRT-------HSCVDATTN 73
           T R+  DC      +G+      Q K ++  E LGH+L ++HR+       H     +  
Sbjct: 121 TFRMPQDCGSPSLSKGLSKDKQEQTKDVLTLENLGHILSYLHRSEIGNWMRHLRAALSLT 180

Query: 72  SSGGRGKNQNLLTSHAQMQCSGEN 1
            +G R  N++L+ +  ++  + EN
Sbjct: 181 CAGIRKTNRSLINTMTELHMNHEN 204

>TRAR_AGRVI (P33909) Transcriptional activator protein traR|
          Length = 234

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 199 KRLRKRNAVFSWRAEQDRP 143
           KR R R  VF+W  EQ+RP
Sbjct: 74  KRARSRKQVFAWSGEQERP 92

>EAA1_RAT (P24942) Excitatory amino acid transporter 1 (Sodium-dependent|
           glutamate/aspartate transporter 1) (Glial glutamate
           transporter) (GLAST) (GLAST-1)
          Length = 543

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 167 REYCIPLSQSLINLLVIILWYSALG 241
           RE+   L+++++ L+ +I+WY+ LG
Sbjct: 268 REFFDSLNEAIMRLVAVIMWYAPLG 292

>EAA1_MOUSE (P56564) Excitatory amino acid transporter 1 (Sodium-dependent|
           glutamate/aspartate transporter) (High-affinity neuronal
           glutamate transporter) (Glial high affinity glutamate
           transporter) (GLAST)
          Length = 543

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 167 REYCIPLSQSLINLLVIILWYSALG 241
           RE+   L+++++ L+ +I+WY+ LG
Sbjct: 268 REFFDSLNEAIMRLVAVIMWYAPLG 292

>EAA1_BOVIN (P46411) Excitatory amino acid transporter 1 (Sodium-dependent|
           glutamate/aspartate transporter 1) (GLAST1)
          Length = 542

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 167 REYCIPLSQSLINLLVIILWYSALG 241
           RE+   L+++++ L+ +I+WY+ LG
Sbjct: 268 REFFDSLNEAIMRLVAVIMWYAPLG 292

>VP30_MABVP (P41326) Minor nucleoprotein VP30 (VP5)|
          Length = 281

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
 Frame = -2

Query: 213 TRRLISDC-----ERGMQYSLGVQNK-IVRAEILGHLLKFVHRTH-SCVDATT------- 76
           T R + DC      +G+      Q K ++  E LGH+L ++HR+    +D T+       
Sbjct: 121 TFRSLQDCGSPSLSKGLSKDKQEQTKDVLTLENLGHILNYLHRSDIGKLDETSLRAALSL 180

Query: 75  NSSGGRGKNQNLLTSHAQMQCSGEN 1
             +G R  N++L+ +  ++  + EN
Sbjct: 181 TCAGIRKTNRSLINTMTELHINHEN 205

>SMG1_DROME (Q70PP2) Serine/threonine-protein kinase Smg1 (EC 2.7.11.1)|
          Length = 3218

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 20  ICACDVNRFWFLPRPPLLFVVASTQECVRWTNLSR*PRISARTILFCTPREYCIPLSQSL 199
           IC C +N F  L   P+L       +  R  +L+   R S   +L CT R     L+ SL
Sbjct: 417 ICICLLNNFTGLD--PILLEQVLLDQVKRMISLTELQRQSVLYLLLCTVRRLRARLTPSL 474

Query: 200 INLL 211
           ++ +
Sbjct: 475 VHFI 478


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,736,756
Number of Sequences: 219361
Number of extensions: 577982
Number of successful extensions: 1573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)