ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome... 66 6e-08
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 66 6e-08
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 66 6e-08
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 66 6e-08
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 66 6e-08
6emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003... 66 6e-08
7gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence 40 3.7
8gb|CP000081.1| Leishmania major chromosome 35, complete sequence 40 3.7
9gb|BC059801.1| Danio rerio plasminogen, mRNA (cDNA clone MGC:659... 40 3.7
10ref|XM_838258.1| Leishmania major strain Friedlin hypothetical p... 40 3.7
11gb|AC117254.3| Mus musculus BAC clone RP24-418D1 from 6, complet... 40 3.7
12gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 3.7
13emb|AL845424.14| Zebrafish DNA sequence from clone CH211-140L13 ... 40 3.7
14ref|NM_201472.1| Danio rerio plasminogen (plg), mRNA 40 3.7
15dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.7
16emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in... 40 3.7
17gb|M33815.1|SMASFUABC S.marcescens periplasmic-binding-protein-d... 40 3.7 
>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0035B18, complete sequence
          Length = 123425

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                         
Query: 199   tatcaatcttcttgtgattatcctatggtactcggcgctgggattttgttgctgcttcta 258
             ||||||| | |||||||||| ||||| ||||| |  |||||  ||||||||||| |||||
Sbjct: 33411 tatcaatttgcttgtgattaccctatagtactagctgctggcgttttgttgctgtttcta 33352

                                  
Query: 259   cataggatttgcccttctcta 279
             || ||| ||||||||||||||
Sbjct: 33351 cacaggctttgcccttctcta 33331
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 199     tatcaatcttcttgtgattatcctatggtactcggcgctgggattttgttgctgcttcta 258
               ||||||| | |||||||||| ||||| ||||| |  |||||  ||||||||||| |||||
Sbjct: 1324968 tatcaatttgcttgtgattaccctatagtactagctgctggcgttttgttgctgtttcta 1324909

                                    
Query: 259     cataggatttgcccttctcta 279
               || ||| ||||||||||||||
Sbjct: 1324908 cacaggctttgcccttctcta 1324888
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 199     tatcaatcttcttgtgattatcctatggtactcggcgctgggattttgttgctgcttcta 258
               ||||||| | |||||||||| ||||| ||||| |  |||||  ||||||||||| |||||
Sbjct: 1414616 tatcaatttgcttgtgattaccctatagtactagctgctggcgttttgttgctgtttcta 1414557

                                    
Query: 259     cataggatttgcccttctcta 279
               || ||| ||||||||||||||
Sbjct: 1414556 cacaggctttgcccttctcta 1414536
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 199     tatcaatcttcttgtgattatcctatggtactcggcgctgggattttgttgctgcttcta 258
               ||||||| | |||||||||| ||||| ||||| |  |||||  ||||||||||| |||||
Sbjct: 1412337 tatcaatttgcttgtgattaccctatagtactagctgctggcgttttgttgctgtttcta 1412278

                                    
Query: 259     cataggatttgcccttctcta 279
               || ||| ||||||||||||||
Sbjct: 1412277 cacaggctttgcccttctcta 1412257
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                           
Query: 199     tatcaatcttcttgtgattatcctatggtactcggcgctgggattttgttgctgcttcta 258
               ||||||| | |||||||||| ||||| ||||| |  |||||  ||||||||||| |||||
Sbjct: 1324968 tatcaatttgcttgtgattaccctatagtactagctgctggcgttttgttgctgtttcta 1324909

                                    
Query: 259     cataggatttgcccttctcta 279
               || ||| ||||||||||||||
Sbjct: 1324908 cacaggctttgcccttctcta 1324888
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>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 157453

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                          
Query: 199    tatcaatcttcttgtgattatcctatggtactcggcgctgggattttgttgctgcttcta 258
              ||||||| | |||||||||| ||||| ||||| |  |||||  ||||||||||| |||||
Sbjct: 104201 tatcaatttgcttgtgattaccctatagtactagctgctggcgttttgttgctgtttcta 104260

                                   
Query: 259    cataggatttgcccttctcta 279
              || ||| ||||||||||||||
Sbjct: 104261 cacaggctttgcccttctcta 104281
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>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     gctgttcgtcgtcgcgtcga 89
              ||||||||||||||||||||
Sbjct: 914076 gctgttcgtcgtcgcgtcga 914057
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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 61      gccgccgctgctgttcgtcgtcgc 84
               ||||||||||||| ||||||||||
Sbjct: 1030599 gccgccgctgctgctcgtcgtcgc 1030576
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>gb|BC059801.1| Danio rerio plasminogen, mRNA (cDNA clone MGC:65923 IMAGE:6789492),
           complete cds
          Length = 3311

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   ttttctccactgcactgcat 21
           ||||||||||||||||||||
Sbjct: 601 ttttctccactgcactgcat 582
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>ref|XM_838258.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1175)
            partial mRNA
          Length = 6936

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 61   gccgccgctgctgttcgtcgtcgc 84
            ||||||||||||| ||||||||||
Sbjct: 6594 gccgccgctgctgctcgtcgtcgc 6571
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>gb|AC117254.3| Mus musculus BAC clone RP24-418D1 from 6, complete sequence
          Length = 172656

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   ctgcttctacataggatttg 269
             ||||||||||||||||||||
Sbjct: 38674 ctgcttctacataggatttg 38693
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     cgctgctgttcgtcgtcgcg 85
              ||||||||||||||||||||
Sbjct: 598010 cgctgctgttcgtcgtcgcg 598029
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>emb|AL845424.14| Zebrafish DNA sequence from clone CH211-140L13 in linkage group 20,
             complete sequence
          Length = 73598

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     ttttctccactgcactgcat 21
             ||||||||||||||||||||
Sbjct: 26418 ttttctccactgcactgcat 26437
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>ref|NM_201472.1| Danio rerio plasminogen (plg), mRNA
          Length = 3311

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   ttttctccactgcactgcat 21
           ||||||||||||||||||||
Sbjct: 601 ttttctccactgcactgcat 582
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 62      ccgccgctgctgttcgtcgtcgcg 85
               ||||||||||||||||||| ||||
Sbjct: 4293904 ccgccgctgctgttcgtcggcgcg 4293881
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>emb|AL935167.8| Zebrafish DNA sequence from clone CH211-186G6 in linkage group 16,
             complete sequence
          Length = 137333

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     tttctccactgcactgcatt 22
             ||||||||||||||||||||
Sbjct: 99967 tttctccactgcactgcatt 99948
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>gb|M33815.1|SMASFUABC S.marcescens periplasmic-binding-protein-dependent iron transport
            protein (sfuABC) genes, complete cds
          Length = 4583

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   gccgccgctgctgttcgtcg 80
            ||||||||||||||||||||
Sbjct: 4082 gccgccgctgctgttcgtcg 4063


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,228,313
Number of Sequences: 3902068
Number of extensions: 2228313
Number of successful extensions: 41371
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41170
Number of HSP's gapped (non-prelim): 201
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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