ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl23c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA1B_RAT (P15823) Alpha-1B adrenergic receptor (Alpha 1B-adreno... 28 4.5
2ADA1B_MOUSE (P97717) Alpha-1B adrenergic receptor (Alpha 1B-adre... 28 4.5
3BIRC4_RAT (Q9R0I6) Baculoviral IAP repeat-containing protein 4 (... 27 9.9

>ADA1B_RAT (P15823) Alpha-1B adrenergic receptor (Alpha 1B-adrenoceptor)|
           (Alpha 1B-adrenoreceptor)
          Length = 515

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 229 SFVRSFGCNCNGGQEARRR 285
           +F+R  GC C GG+  RRR
Sbjct: 358 AFMRILGCQCRGGRRRRRR 376



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>ADA1B_MOUSE (P97717) Alpha-1B adrenergic receptor (Alpha 1B-adrenoceptor)|
           (Alpha 1B-adrenoreceptor)
          Length = 514

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 229 SFVRSFGCNCNGGQEARRR 285
           +F+R  GC C GG+  RRR
Sbjct: 357 AFMRILGCQCRGGRRRRRR 375



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>BIRC4_RAT (Q9R0I6) Baculoviral IAP repeat-containing protein 4 (Inhibitor of|
           apoptosis protein 3) (X-linked inhibitor of apoptosis
           protein) (X-linked IAP) (IAP homolog A) (RIAP3) (RIAP-3)
          Length = 496

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = +1

Query: 130 PTCCSASGSIHT--TFPCHSHVVPLSVLVDGLVISSFVRSFGCNCNGGQ----EARRRCW 291
           P  CS    + T   +P ++H+ P  +   GL  +       C C GG+    E   R W
Sbjct: 158 PAMCSEEARLKTFQNWPDYAHLSPRELASAGLYYTGIDDQVQCFCCGGKLKNWEPCDRAW 217

Query: 292 S*YR 303
           S +R
Sbjct: 218 SEHR 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,737,716
Number of Sequences: 219361
Number of extensions: 417951
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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