>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (4SNc-Tudor domain
           protein)
          Length = 897

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +2

Query: 137 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARR 298
           + +S   A    RG VK V SG  +++ G  +   PPE+ I LS + A  LARR
Sbjct: 9   VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARR 62

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = +2

Query: 134 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 295
           A  A ++G+SG        RG VK V SG  +++ G  +   PPE+ I LS + A  LAR
Sbjct: 2   ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61

Query: 296 R 298
           R
Sbjct: 62  R 62

>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (SND p102) (p105
           coactivator)
          Length = 909

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = +2

Query: 143 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARR 298
           A ++G+SG        RG VK V SG  +++ G  +   PPE+ I LS + A  LARR
Sbjct: 4   AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARR 61

>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator)
          Length = 910

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +2

Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARR 298
           RG VK V SG  +++ G  +   PPE+ I LS + A  LARR
Sbjct: 21  RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARR 62

>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
           co-activator) (100 kDa coactivator) (EBNA2 coactivator
           p100)
          Length = 910

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +2

Query: 173 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARR 298
           RG +K V SG  +++ G  +   PPE+ I LS + A  LARR
Sbjct: 21  RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARR 62

>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 431

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 110 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 277
           + AG S+  ++A +TG + W+   + A     TS   +LI  S +     EK++      
Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291

Query: 278 APRLA 292
            PR A
Sbjct: 292 LPRTA 296

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 113 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 226
           AAG  +S+GA +       G  RG  K+ T+GDC    GS
Sbjct: 66  AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105

>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc|
            binding protein 2) (Protein associated with Myc)
            (Pam/highwire/rpm-1 protein)
          Length = 4711

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 111  SGLRLPIRDPGEGVWPAG*SLLS-RPDPDPN 22
            +GL + ++DP +G+ P G  L+  + DP PN
Sbjct: 2393 AGLEVKVKDPPKGMIPPGTQLVKPKADPQPN 2423

>COBQ_MYCTU (P0A532) Cobyric acid synthase|
          Length = 494

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 151 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 300
           H+  R+ +G+G G    G   HHG     D A E        GP  G+ W
Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423

>COBQ_MYCBO (P0A533) Cobyric acid synthase|
          Length = 494

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 151 HRSFRMAKGQGEGCDFWGLPSHHGEHQGRDPAREVHHSVIPYGPKAGSSW 300
           H+  R+ +G+G G    G   HHG     D A E        GP  G+ W
Sbjct: 375 HKVLRLPRGEGLGVPASGYEIHHGRITRGDTAEEFLGGARD-GPVFGTMW 423


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,861,137
Number of Sequences: 219361
Number of extensions: 761417
Number of successful extensions: 2167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2167
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)