ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl23b12 |
|---|---|
| Clone Library Name | barley_pub |
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 31.6 bits (70), Expect = 0.79 Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +1 Query: 31 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVA--GHLRIC-* 192 P SPAP P L+A + S N R + + GG+ ADPVA C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 193 NPSALLPCSCSPTPGQPL-RIASISPSDS 276 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 31.6 bits (70), Expect = 0.79 Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +1 Query: 31 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVA--GHLRIC-* 192 P SPAP P L+A + S N R + + GG+ ADPVA C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 193 NPSALLPCSCSPTPGQPL-RIASISPSDS 276 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 31.6 bits (70), Expect = 0.79 Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = +1 Query: 31 PLSPAPHPRLSLSA---LA*GSCRGENPRDRSMRAGTAGGELLRRADPVA--GHLRIC-* 192 P SPAP P L+A + S N R + + GG+ ADPVA C Sbjct: 102 PASPAPSPAPGLAAMLKMVHSSVAPGNGRRATGSSSPGGGD---AADPVALDSDTETCPG 158 Query: 193 NPSALLPCSCSPTPGQPL-RIASISPSDS 276 +P P S SP G P R+ SIS S S Sbjct: 159 SPQPEFPSSASPGGGSPAPRVRSISISSS 187
>RPA1_TRYBB (P16355) DNA-directed RNA polymerase I largest subunit (EC 2.7.7.6)| Length = 1744 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = -3 Query: 303 IHEEDPEKDGIGGGDTRNPQRLAGSRRTGAREQC-*RISADPEVAGHRICTP 151 +H + + GI G DT PQR GS +G + +ADP++ R +P Sbjct: 1411 LHSDGTDTRGIAGSDTGGPQRRRGSVESGRGDDASDSEAADPDLYARRSGSP 1462
>TRI18_RAT (P82458) Midline-1 (Tripartite motif protein 18)| Length = 667 Score = 30.0 bits (66), Expect = 2.3 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +1 Query: 1 WALPHSSTLFPLSPAPHPR 57 W + H+S P+ PAPHPR Sbjct: 584 WVVRHNSKEIPIEPAPHPR 602
>PEX6_PENCH (Q9HG03) Peroxisomal biogenesis factor 6 (Peroxin-6)| Length = 1459 Score = 29.6 bits (65), Expect = 3.0 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = +3 Query: 87 LPRRKPERSIHEGGDRRRGAAPACRSGGRPPQDLLKSFSIAPLLLFSDSRP 239 LP KP +I+ G+RR + RPP L S + PLLL + P Sbjct: 504 LPSSKPRYAINHSGERRPSISQ------RPPTRLTPSVFVPPLLLGNIENP 548
>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin| binding protein I) (Protein phosphatase 1 regulatory subunit 9A) Length = 1098 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 93 RRKPERSIHEGGDRRRGAAPACRSGGRPPQD 185 R+ ERS+HE G R + ++GG PQD Sbjct: 143 RKMFERSVHESGQNNRYSPKKEKAGGSEPQD 173
>SYTL2_HUMAN (Q9HCH5) Synaptotagmin-like protein 2 (Exophilin-4)| Length = 895 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -3 Query: 396 QNGFAINNSGKVAFNRTFREKILHQIPACDLIHEEDPEKDGIGGGDTRNPQR 241 +N IN + T E +L + PA +L H +PE + GG +R+ Q+ Sbjct: 420 ENSPTINEPKDKSSELTRLESVLPRSPADELSHCVEPEPSQVPGGSSRDRQQ 471
>CUT2_CAEEL (P34682) Cuticlin-2 precursor| Length = 231 Score = 28.5 bits (62), Expect = 6.7 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +1 Query: 52 PRLSLSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVAGH 177 PRLSL +L G C G P + A AGG A PV G+ Sbjct: 56 PRLSLPSLG-GGCGGPAPCAAAPIAAPAGGYATAPAAPVGGY 96
>AGUA_ERWCT (Q6CZ80) Putative agmatine deiminase (EC 3.5.3.12) (Agmatine| iminohydrolase) Length = 368 Score = 28.5 bits (62), Expect = 6.7 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 342 REKILHQIPACDLIHEEDPEKDGIGGGDTRNPQRLAGSRRTGA 214 RE + ++PA +H E G+ GD +RLAGSR G+ Sbjct: 265 RELKIWKLPAPGPLHATKEEAQGVDSGDA--VERLAGSRLAGS 305
>OTRA_STRRM (Q55002) Oxytetracycline resistance protein| Length = 663 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -1 Query: 302 FTRRIPKRTESEGEILAIRRGW-PGVGEQEQGSNAEG 195 F +R+P T+ EG LA RG+ P VG+ EG Sbjct: 610 FNQRVPGLTQGEGVFLAEHRGYRPAVGQPPVRPRPEG 646
>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)| Length = 174 Score = 28.1 bits (61), Expect = 8.8 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 90 PRRKPERSIHEGGDRRRGAAP-ACRSGGRPPQDLLKS 197 P KPER +GGD+ +G P + G PPQ+ KS Sbjct: 134 PPGKPERPPPQGGDQSQGPPPHPGKPEGPPPQEGNKS 170
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 28.1 bits (61), Expect = 8.8 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = +1 Query: 31 PLSPAPHP-RLSLSALA*GSCRGENPRDRSMRAGTAGGELLRRADPVAGHLRIC*NPSAL 207 P S APH +L S + G + S + T G L + P+ L I +P Sbjct: 336 PCSVAPHDSQLISSTILINEMNGVGEK-LSAKENTVG-MLRQEVLPLTLELEILEHPQEE 393 Query: 208 LPCSCSPTPGQPLRIASISPS 270 L C+PTP P + + SP+ Sbjct: 394 LKVECTPTPIAPSMLPAFSPA 414
>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go related gene potassium channel 1) (H-ERG) (Erg1) (Ether-a-go-go related protein 1) (Eag-related protein 1) (eag homo Length = 1159 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -1 Query: 332 FSTRFQHAT*FTRRIPKRTESEGEILAIRRGWPGVGEQEQG 210 FS + + F RR K TE GE+ A+ G G G +G Sbjct: 881 FSRQRKRKLSFRRRTDKDTEQPGEVSALGPGRAGAGPSSRG 921 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,364,667 Number of Sequences: 219361 Number of extensions: 1304037 Number of successful extensions: 3816 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3650 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3811 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
