ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl23b10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 129 bits (323), Expect = 2e-30 Identities = 64/88 (72%), Positives = 64/88 (72%) Frame = +3 Query: 141 MLAATKPLVGGACXXXXXXXXXXTFVVPEARRKPGNGRRTSVSKVGXXXXXXXXXXXXXL 320 ML ATKPLVGGAC TFVVPEARRKPGNGRRTSVSKVG L Sbjct: 1 MLTATKPLVGGACAAPSSSARRRTFVVPEARRKPGNGRRTSVSKVGSTSTSTTTTTTTTL 60 Query: 321 SADSNGAAVGTVTRPDVHVQDRTHATEM 404 SADSNGAAVGTVTRPDVHVQDRTHATEM Sbjct: 61 SADSNGAAVGTVTRPDVHVQDRTHATEM 88
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 41.2 bits (95), Expect = 6e-04 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Frame = +3 Query: 141 MLAATKPLVGGACXXXXXXXXXXTFVVPEARRKPG-NGRRTSVSKVGXXXXXXXXXXXXX 317 M ATKPLVG +F+V EARRKP N RRT V Sbjct: 1 MQTATKPLVGARAVPLSRRA---SFLVAEARRKPSTNARRTRVG------STSTTTTTTT 51 Query: 318 LSADSNGAAVGTVTRPDVHVQDRTHATEM 404 + D NG A+ TV +P H D EM Sbjct: 52 ILTDVNGPALTTVAKPG-HQYDLKQTVEM 79
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 32.3 bits (72), Expect = 0.28 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -3 Query: 240 VSGEPRAPRTSSAGPTTTARHTRPRLAAWSPPA 142 +S EPR PR S+ RH RP L A PPA Sbjct: 71 LSREPRGPRALSSFVRDARRHPRPALTASPPPA 103
>DUSC_AZOVI (P96192) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 309 Score = 25.0 bits (53), Expect(2) = 2.6 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 7/65 (10%) Frame = -3 Query: 180 HTRPRLAAWSPPASW-----VRYGVG--YCATRWGGRLHRLGWFRPS*TVQPCPGRSGKE 22 H R ++ + PPASW VR V A R GR R+G C SG E Sbjct: 167 HARTKVEGYRPPASWEWLARVREAVAVPVYANRKSGR-RRIG----------CREISGVE 215 Query: 21 EVMEG 7 +VM G Sbjct: 216 DVMLG 220 Score = 22.7 bits (47), Expect(2) = 2.6 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -2 Query: 256 RRPLPGFRRASGTTNVLRRADDDGAAH 176 R+ PG R A G V R + G AH Sbjct: 137 RQDAPGVRPARGRPGVRRALVEGGVAH 163
>SUBT_BACLI (P00780) Subtilisin Carlsberg precursor (EC 3.4.21.62)| Length = 379 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Frame = -2 Query: 355 TVPTAAPLESADKXXXXXXXXXXXXLPTLETLVRRPLPGFRRASGTTNVLRRA-DDDGAA 179 TVP PL ADK + L+T ++ P G + V A + DG Sbjct: 108 TVPYGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLNVVGGASFVAGEAYNTDGNG 167 Query: 178 HAPPTSGLVAA 146 H +G VAA Sbjct: 168 HGTHVAGTVAA 178
>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)| Length = 579 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 228 PRAPRTSSAGPTTTARHTRPRLAAWSPPAS 139 P + +S A P T RH +P A++S P S Sbjct: 28 PESSSSSPASPATERRHPQPLAASFSSPGS 57
>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)| Length = 579 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -3 Query: 228 PRAPRTSSAGPTTTARHTRPRLAAWSPPAS 139 P + +S A P T RH +P A++S P S Sbjct: 28 PESSSSSPASPATERRHPQPLAASFSSPGS 57
>SC10A_RAT (Q62968) Sodium channel protein type 10 alpha subunit (Sodium| channel protein type X alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.8) (Peripheral nerve sodium channel 3) (Sensory neuron sodium channel) Length = 1956 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/55 (30%), Positives = 21/55 (38%) Frame = +2 Query: 62 LGRNQPRRCNLPPHRVAQ*PTP*RTHDAGGDQAASRGRVCRAVVVGPAEDVRGAR 226 LGR + LP + Q P P R H G G + GPA D G + Sbjct: 538 LGRGAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQK 592
>PO121_RAT (P52591) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1199 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -3 Query: 240 VSGEPRAPRTSSAGPTTTARHTRPRLAAWSPPA 142 +S EPR PR S+ + RH RP L A PA Sbjct: 71 LSREPRGPRGLSSFVRESRRHPRPALTASPLPA 103
>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA| ligase 2) (Acyl-activating enzyme 2) Length = 644 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -3 Query: 108 TRWGGRLHRLGWFRPS*TVQPCPGRSGKEEVMEGS 4 T W + RL W +P +VQ C +GK +G+ Sbjct: 37 TFWAEQAKRLDWIKPWSSVQQCDLHTGKARWFDGA 71
>GUAA_LEGPL (Q5WVX4) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%) Frame = -3 Query: 207 SAGPTTTARHTRPRLAAW----SPPASWVRYGVGYCATRWGGRLH 85 S GP+T PR W P + YG+ A + GG++H Sbjct: 56 SGGPSTVTHDANPRAPQWLFESDLPLLGICYGMQTMAVQLGGQVH 100
>GUAA_LEGPH (Q5ZUS0) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%) Frame = -3 Query: 207 SAGPTTTARHTRPRLAAW----SPPASWVRYGVGYCATRWGGRLH 85 S GP+T PR W P + YG+ A + GG++H Sbjct: 56 SGGPSTVTHDANPRAPQWLFDSGLPLLGICYGMQTMAVQLGGQVH 100
>GUAA_LEGPA (Q5X4I9) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 525 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%) Frame = -3 Query: 207 SAGPTTTARHTRPRLAAW----SPPASWVRYGVGYCATRWGGRLH 85 S GP+T PR W P + YG+ A + GG++H Sbjct: 56 SGGPSTVTHDANPRAPQWLFESDLPLLGICYGMQTMAVQLGGQVH 100
>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1287 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Frame = -3 Query: 228 PRAPRTSSA--GPTTTARHTRPRLAAWSPPASWVRYGVGYCATRWGGRLHRLGWFR 67 PR P+ A GP T R P W PP + Y A GG LHR +R Sbjct: 1204 PRLPQKQRAPWGPRTPHRVPGP----WGPPEPLLLYRAAPPAYGRGGELHRGSLYR 1255
>TBX21_MOUSE (Q9JKD8) T-box transcription factor TBX21 (T-box protein 21)| (Transcription factor TBLYM) (T-cell-specific T-box transcription factor T-bet) Length = 530 Score = 27.3 bits (59), Expect = 8.9 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = -3 Query: 210 SSAGPTTTARHTRPRLAAWSPPASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQPCPGRS 31 S+ GPT + LA P A W A ++ ++ GWFRP T+ PG Sbjct: 410 SAPGPTVPYYRGQDVLA---PGAGWP------VAPQYPPKMSPAGWFRPMRTLPMDPGLG 460 Query: 30 GKEE 19 EE Sbjct: 461 SSEE 464
>BAG4_HUMAN (O95429) BAG family molecular chaperone regulator 4| (BCL2-associated athanogene 4) (BAG-4) (Silencer of death domains) Length = 457 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/41 (39%), Positives = 18/41 (43%) Frame = -3 Query: 150 PPASWVRYGVGYCATRWGGRLHRLGWFRPS*TVQPCPGRSG 28 PP SW G G T W G + PS P PGR+G Sbjct: 46 PPISWRVRGGGPAETTWLGEGGGGDGYYPSGGAWPEPGRAG 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,452,154 Number of Sequences: 219361 Number of extensions: 924889 Number of successful extensions: 2582 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2582 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
