>DPY2_CAEEL (P35799) Cuticle collagen dpy-2 precursor (Protein dumpy-2)|
          Length = 360

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 172 PHCLAAGEQHPDGTAGLKQLPGNSAPRTAP 83
           P C   GE+ P G +GL  LPG   P  AP
Sbjct: 117 PACCIPGERGPSGDSGLPALPGAPGPDGAP 146

>ECTB_MARHA (O06060) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)|
           (Diaminobutyrate--2-oxoglutarate aminotransferase)
           (L-2,4-diaminobutyric acid transaminase) (DABA
           aminotransferase)
          Length = 427

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 142 PDGTAGLKQLPGNSAPRTAPLPCPWYDAARTKESSGTMRGN 20
           PD     K + GN +P    L  P YD     E +GT RGN
Sbjct: 262 PDFVCLSKSIGGNGSPLAITLVAPEYDKFAPGEHNGTFRGN 302

>ODO2_FUGRU (Q90512) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2
          Length = 409

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -1

Query: 183 TRPLPIASPPANSTLTGRLASSSCPGTALQERHRYPVPGTTQPEP 49
           T P+  A PP    ++   A  S P    Q     PVP  T PEP
Sbjct: 126 TEPVTAAPPPPPPPVSAPTAMPSVPPVPTQALQAKPVPAPTLPEP 170

>PUR6_PONPY (Q5RB59) Multifunctional protein ADE2 [Includes:|
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           (EC 6.3.2.6) (SAICAR synthetase);
           Phosphoribosylaminoimidazole carboxylase (EC 4.1.1.21)
           (AIR carboxylase) (AIRC)]
          Length = 424

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = +3

Query: 36  PEDSLVLAASYQGQGSGAVLGA-------LFPGSCLRPAVPSGCCSPAARQWGA 176
           P+++L + A Y+G G   V  A       L P  C   A P   C P    WGA
Sbjct: 305 PDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMCGNTAYPVISCPPLTPDWGA 358

>KELC_ANOST (Q70JS2) Ring canal kelch homolog (Kelch-like protein 1) [Contains:|
           Kelch short protein]
          Length = 1499

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 180 RPLPIASPPANSTLTGRLASSSCPGTALQ-ERHRYPVPGTTQPEPRSPREQ 31
           R  P  S   N   TG  A+  CP   L   R RYP   + Q + R+PR++
Sbjct: 831 RGRPAPSYYQNQPPTGPSANGRCPNLHLDLNRVRYPSGASAQQQQRTPRQR 881

>EOMES_MOUSE (O54839) Eomesodermin homolog|
          Length = 688

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 57  AASYQGQGSGAVLGALFP-GSCLRPA-VPSGCCSPAARQWGAAASA 188
           A +  G G  A  GA +P GS L P   P+  C PA  Q+G AA +
Sbjct: 171 AGAAHGPGYPASNGARYPYGSMLPPGGFPAAVCPPARAQFGPAAGS 216

>IRGA_VIBCH (P27772) Iron-regulated outer membrane virulence protein precursor|
          Length = 652

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +3

Query: 24  PRIVPEDSL--VLAASYQ-GQGSGAVLGAL---FPGSCLRPAVPSGCCSPAARQWGAA 179
           P + PE S+   L+  Y  G G  A L A    F     R A P+  C+    QWGAA
Sbjct: 445 PDLKPETSINKELSLMYSTGSGLAASLTAFHNDFKDKITRVACPANICTAGPNQWGAA 502

>OXAA_CAUCR (Q9AA40) Inner membrane protein oxaA|
          Length = 615

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 53  SGCVVPGTG*RCRSWSAVPGQLLEASRPVRVLFAGGEAMGSGRVCYV 193
           +G  +PG       W+A PGQ+L  + PV + +  G  +   RV  V
Sbjct: 135 AGANLPGLPDSRTVWTAAPGQVLRPNSPVTLTYDNGLGLTFTRVIAV 181

>LAX3_ORYSA (Q7XGU4) Auxin transporter-like protein 3|
          Length = 547

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 7   IQHGNCLALFPRTPW 51
           + H N LAL PRTPW
Sbjct: 311 LTHSNALALLPRTPW 325

>PYRD_STRAW (Q827Q6) Dihydroorotate dehydrogenase (EC 1.3.3.1) (Dihydroorotate|
           oxidase) (DHOdehase) (DHODase) (DHOD)
          Length = 368

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   NPARQLPRIVPEDSLVLAASYQGQGSGAVLGAL 104
           NP ++L R+VP+ +L+    +  +GS AV   L
Sbjct: 100 NPKKRLFRLVPDRALINRMGFNNEGSAAVAARL 132

>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
            (Tip110)
          Length = 963

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
 Frame = +3

Query: 9    PARQLP-----RIVPEDSLVLAASYQGQGSGAVLGALFPGSCLRP--AVPSGCCSPAARQ 167
            P R++P     R  P   ++L  +Y  +G G    +L P +  RP  A P     PAA  
Sbjct: 879  PQRKVPEKPETRKAPGGPMLLPQTYGARGKGRTQLSLLPRALQRPSAAAPQAENGPAAAP 938

Query: 168  WGAAASAT 191
              AA +AT
Sbjct: 939  AVAAPAAT 946

>SBCD_RHOCA (O68033) Exonuclease sbcD homolog|
          Length = 405

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 181 AAAPHCLAAGEQHPDGTAGLKQLPGNSAPRTAPLPCP 71
           + AP  L+A E   D    L  L G +APR  PLP P
Sbjct: 247 SGAPFPLSASEIGYDHGVTLLDLAGGAAPRHIPLPRP 283

>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 14/54 (25%)
 Frame = -3

Query: 160 AAGEQHPDGTAG-------LKQLPGNS-------APRTAPLPCPWYDAARTKES 41
           A GE  P+ T+G         +LPG S        P T P+P  W DA+ T  S
Sbjct: 539 AEGEAEPNETSGGMGAIPSNAELPGTSDARQELTLPTTKPVPARWEDASFTDSS 592

>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 186  QTRPLPIASPPANSTLTGRLASSSCPGTAL---QERHRYPVPGTTQPEPRSPREQ 31
            Q + LP A P          ASS+ PG++    Q+     VPG T+P+P++ R Q
Sbjct: 3396 QNKTLPSAKP----------ASSASPGSSPSSGQQSGSSSVPGPTKPKPKAKRIQ 3440

>HES2_HUMAN (Q9Y543) Transcription factor HES-2 (Hairy and enhancer of split 2)|
          Length = 173

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 124 LKQLPGNSAPRTAPLPCPWY 65
           L++LP +S P  APLPC  Y
Sbjct: 67  LQELPASSWPTAAPLPCDSY 86

>FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) (Leukocyte|
           formin) (CLL-associated antigen KW-13)
          Length = 1100

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 177 PLPIASPPANSTLTGRLASSSCPGTALQERHRYPVPGTTQPEPRSP 40
           P P A+PP    L G  +    P +A  +    P+PG+ +P P  P
Sbjct: 536 PAPGAAPPPPPPLPGLPSPQEAPPSAPPQAP--PLPGSPEPPPAPP 579

>CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2)|
           (MPc2)
          Length = 551

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 160 AAGEQHPDGTAGLKQLPGNSAPRTAPLPC 74
           AA E+HP G    K+  G S  + A +PC
Sbjct: 298 AAEERHPQGDRTFKKAAGASEEKKAEVPC 326

>Y489_MYCBO (P64700) Hypothetical protein Mb0489c|
          Length = 348

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 171 PIASPPANS-TLTGRLASSSCPGTALQERHRYPVPGTTQPEPRSPREQCEA 22
           P+A PPA+S   TGRL     P   +QE    PV   TQPE +   E   A
Sbjct: 22  PLARPPASSEASTGRLRPGE-PAGHIQE----PVSPPTQPEQQPQTEHLAA 67

>Y479_MYCTU (P64699) Hypothetical protein Rv0479c/MT0497|
          Length = 348

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 171 PIASPPANS-TLTGRLASSSCPGTALQERHRYPVPGTTQPEPRSPREQCEA 22
           P+A PPA+S   TGRL     P   +QE    PV   TQPE +   E   A
Sbjct: 22  PLARPPASSEASTGRLRPGE-PAGHIQE----PVSPPTQPEQQPQTEHLAA 67

>UVRA_BRAJA (Q89L46) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 991

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 193 NVADAAAPHCLAAGEQHPDGTAGLKQLPGNSAPRTAP 83
           N ++ AAPH    G +H D    + Q P    PR+ P
Sbjct: 700 NASEGAAPHDRIEGLEHIDKIIDIDQSPIGRTPRSNP 736

>PO2F3_HUMAN (Q9UKI9) POU domain, class 2, transcription factor 3|
           (Octamer-binding transcription factor 11) (Oct-11)
           (Transcription factor Skn-1) (PLA-1 protein)
          Length = 436

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 171 PIASPPANSTLTGRLASSSCPGTALQERHRYPVPGTTQPEPRSPREQCEA 22
           P++ PP +ST+ G + SS  PG     R   P  G     P + +   +A
Sbjct: 365 PLSVPPVHSTMPGTVTSSCSPGN--NSRPSSPGSGLHASSPTASQNNSKA 412

>PO2F3_MOUSE (P31362) POU domain, class 2, transcription factor 3|
           (Octamer-binding transcription factor 11) (Oct-11)
           (Epoc-1)
          Length = 431

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 171 PIASPPANSTLTGRLASSSCPGTALQERHRYPVPGTTQPEPRSPREQCEA 22
           P++ PP +ST+ G + SS  PG     R   P  G     P + +   +A
Sbjct: 358 PLSVPPVHSTMPGTVTSSCSPGN--NSRPSSPGSGLHASSPTASQNNSKA 405


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,206,119
Number of Sequences: 219361
Number of extensions: 620141
Number of successful extensions: 3727
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3724
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)